YAHA
Revision as of 21:29, 6 December 2019 by Moskalenko (talk | contribs) (Text replacement - "#uppercase" to "uc")
The printable version is no longer supported and may have rendering errors. Please update your browser bookmarks and please use the default browser print function instead.
Description
YAHA is a flexible, sensitive and accurate hash-based DNA aligner for relatively long queries that operates in three distinct modes. It can output all the alignments found for each query, only the set of alignments that optimally cover each query, or add alignments that are similar to those that optimally cover the query. These latter two modes are especially useful for finding split-read mappings used to accurately identify structural variation events.
Required Modules
System Variables
- HPC_YAHA_DIR
Citation
If you publish research that uses yaha you have to cite it as follows:
Citation: Faust GG and Hall IM. YAHA: fast and flexible long-read alignment with optimal breakpoint detection. Bioinformatics (2012) 28(19): 2417-2424. Epub 2012 Jul 24. doi:10.1093/bioinformatics.
Validation
- Validated 4/5/2018