Difference between revisions of "VT"

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==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
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{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 21:29, 6 December 2019

Description

vt website  

vt is a variant tool set that discovers short variants from Next Generation Sequencing data.

Required Modules

Serial

  • vt

System Variables

  • HPC_VT_DIR - installation directory




Citation

If you publish research that uses vt you have to cite it as follows:

Adrian Tan, Gonçalo R. Abecasis and Hyun Min Kang. Unified Representation of Genetic Variants. Bioinformatics (2015) 31(13): 2202-2204