Difference between revisions of "VEP"

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[[Category:Software]][[Category:Biology]][[Category:Genomics]]
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[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|vep}}
 
|{{#vardefine:app|vep}}
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<!--Modules-->
 
<!--Modules-->
==Required Modules==
+
==Environment Modules==
===Serial===
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==
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<!--Turn the Table of Contents and Edit paragraph links ON/OFF-->
 
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__NOTOC____NOEDITSECTION__
 
__NOTOC____NOEDITSECTION__
=Validation=
 
* Validated 4/5/2018
 

Latest revision as of 17:28, 22 August 2022

Description

vep website  

Use Variant Effect Predictor (VEP) to analyse your variation data locally. No limits, powerful, fast and extendable. VEP is the best way to get the most out of the Ensembl.

Environment Modules

Run module spider vep to find out what environment modules are available for this application.

System Variables

  • HPC_VEP_DIR - installation directory




Citation

If you publish research that uses vep you have to cite it as follows:

McLaren et. al. (doi:10.1093/bioinformatics/btq330)