Difference between revisions of "VEP"

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==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
<!--Configuration-->
 
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{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 21:29, 6 December 2019

Description

vep website  

Use Variant Effect Predictor (VEP) to analyse your variation data locally. No limits, powerful, fast and extendable. VEP is the best way to get the most out of the Ensembl.

Required Modules

Serial

  • vep

System Variables

  • HPC_VEP_DIR - installation directory




Citation

If you publish research that uses vep you have to cite it as follows:

McLaren et. al. (doi:10.1093/bioinformatics/btq330)


Validation

  • Validated 4/5/2018