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vdjtools website  

A comprehensive analysis framework for T-cell and B-cell repertoire sequencing data.

Environment Modules

Run module spider vdjtools to find out what environment modules are available for this application.

System Variables

  • HPC_VDJTOOLS_DIR - installation directory
  • HPC_VDJTOOLS_BIN - executable directory
  • HPC_VDJTOOLS_DOC - documentation directory


If you publish research that uses vdjtools you have to cite it as follows:

Shugay M et al. VDJtools: Unifying Post-analysis of T Cell Receptor Repertoires. PLoS Comp Biol 2015; 11(11):e1004503-e1004503.