Difference between revisions of "VAST-TOOLS"
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| − | [[Category:Software]][[Category: | + | [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]] |
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|{{#vardefine:app|vast-tools}} | |{{#vardefine:app|vast-tools}} | ||
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| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
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Latest revision as of 17:26, 22 August 2022
Description
Vertebrate Alternative Splicing and Transcription Tools (VAST-TOOLS) is a toolset for profiling alternative splicing events in RNA-Seq data.
Environment Modules
Run module spider vast-tools to find out what environment modules are available for this application.
System Variables
- HPC_VAST-TOOLS_DIR - installation directory
Additional Information
Two VASTDB databases provided by the project have been downloaded and installed into the default location
- Hsa (vastdb.hsa.7.3.14, human)
- Mmu (vastdb.mmu.7.3.14, mouse)