Difference between revisions of "VAST-TOOLS"
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Moskalenko (talk | contribs) (Created page with "Category:SoftwareCategory:BioinformaticsCategory:NGS {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|vast-tools}} |{{#vardefine:url|https://github.com/vastgroup...") |
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| − | [[Category:Software]][[Category: | + | [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|vast-tools}} | |{{#vardefine:app|vast-tools}} | ||
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|{{#vardefine:conf|}} <!--CONFIGURATION--> | |{{#vardefine:conf|}} <!--CONFIGURATION--> | ||
| − | |{{#vardefine:exe|}} <!--ADDITIONAL INFO--> | + | |{{#vardefine:exe|1}} <!--ADDITIONAL INFO--> |
|{{#vardefine:pbs|}} <!--PBS SCRIPTS--> | |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> | ||
|{{#vardefine:policy|}} <!--POLICY--> | |{{#vardefine:policy|}} <!--POLICY--> | ||
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<!--Modules--> | <!--Modules--> | ||
| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
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{{#if: {{#var: exe}}|==Additional Information== | {{#if: {{#var: exe}}|==Additional Information== | ||
| − | + | Two VASTDB databases provided by the project have been downloaded and installed into the default location | |
| + | * Hsa (vastdb.hsa.7.3.14, human) | ||
| + | * Mmu (vastdb.mmu.7.3.14, mouse) | ||
|}} | |}} | ||
Latest revision as of 17:26, 22 August 2022
Description
Vertebrate Alternative Splicing and Transcription Tools (VAST-TOOLS) is a toolset for profiling alternative splicing events in RNA-Seq data.
Environment Modules
Run module spider vast-tools to find out what environment modules are available for this application.
System Variables
- HPC_VAST-TOOLS_DIR - installation directory
Additional Information
Two VASTDB databases provided by the project have been downloaded and installed into the default location
- Hsa (vastdb.hsa.7.3.14, human)
- Mmu (vastdb.mmu.7.3.14, mouse)