Difference between revisions of "VAST-TOOLS"

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==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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WRITE_ADDITIONAL_INSTRUCTIONS_ON_RUNNING_THE_SOFTWARE_IF_NECESSARY
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Two VASTDB databases provided by the project have been downloaded and installed into the default location
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* Hsa (vastdb.hsa.7.3.14, human)
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* Mmu (vastdb.mmu.7.3.14, mouse)
  
 
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=Validation=
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* Validate 4/5/2018

Latest revision as of 21:29, 6 December 2019

Description

vast-tools website  

Vertebrate Alternative Splicing and Transcription Tools (VAST-TOOLS) is a toolset for profiling alternative splicing events in RNA-Seq data.

Required Modules

Serial

  • vast-tools

System Variables

  • HPC_VAST-TOOLS_DIR - installation directory

Additional Information

Two VASTDB databases provided by the project have been downloaded and installed into the default location

  • Hsa (vastdb.hsa.7.3.14, human)
  • Mmu (vastdb.mmu.7.3.14, mouse)




Validation

  • Validate 4/5/2018