Difference between revisions of "UFRC Help and Documentation"

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[[Category:Docs]]
 
__NOTOC__
 
__NOTOC__
Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] [http://www.hpc.ufl.edu High Performance Computing Center] Wiki. This site provides documentation for various software applications and hardware configurations provided by the UF HPC Center. Please submit a request in our [http://support.hpc.ufl.edu Support System] or send email to [mailto://support@hpc.ufl.edu HPC support].</span>
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=== Getting Started ===
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Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Help and Documentation site. General information, policies, and purchase request forms are on our [https://www.rc.ufl.edu main web site]. The information here is focused on particular applications, services, and usage examples. [https://support.rc.ufl.edu Provide Feedback].</span>
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{{Note|[[https://lists.ufl.edu/cgi-bin/wa?A0=HPC-ANNOUNCE-L HiPerGator News and Announcements]] |news}}
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=== For New Users ===
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* [[Getting Started]]
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* '''[[Getting Started ]]'''
* [[Policies]]
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* '''[[Training|Training, Events, Videos]]'''
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* [[New user training]]
* [[Getting Help]]
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* [[Frequently Asked Questions]]
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* [[Development_and_Testing|Interactive Development and Testing]]
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* [[Storage|Practical Storage Use]]
* [[Samba Access]]
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* [[Password | Changing your Password]]
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* '''[[Get_Help|How To Get Help]]'''</span>
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* <span class="plainlinks">[https://support.rc.ufl.edu/enter_bug.cgi Submit a Support Request]</span>
* [[Mailing Lists]]
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* [[AI Help|AI Help]]
 
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=== System Information ===
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=== Interfaces and Access===
 
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* [[Schedulers]]
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* [[Jupyter_Notebooks| Jupyter (Python, R)]]
* [[Job Submission Queues]]
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* [[Galaxy|Galaxy Genomics Framework]]
* [[Sample Scripts | Sample Submission Script]]
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* [[Open OnDemand|OnDemand (Matlab, RStudio,...)]]
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* [[Cluster Monitoring]]
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* [[Managing Python environments and Jupyter_kernels | Conda and Jupyter Kernels ]]
* [[Operating Environment]]
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* [[GUI Programs|Running GUI Apps]]
* [[Node Performance]]
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* [[GPU_Access|GPU Access]]
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* [[Hardware Testing]]
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* [[Authentication With MFA|Multi-Factor Authentication]]
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* [[SSH Multiplexing]]
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* [[Blocked Accounts]]
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=== Software and Libraries ===
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=== Scheduler ===
 
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* [[Installed Software]]
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* [[SLURM_Commands|SLURM Commands]]
* [[Modules]]
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* [[Account_and_QOS_limits_under_SLURM|Account and QOS Limits Under SLURM]]
* [[Galaxy]]
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* [[Large-Memory_SMP_Servers|Big Memory Partition]]
* [[Command List]]
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* [[Available Node Features]]
* [[OpenMP]]
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* [[OpenMPI]]
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* [[Sample_SLURM_Scripts|SLURM Job Script Examples]]
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* [[SLURM_Job_Arrays|SLURM Job Arrays]]
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=== Software and Reference Data===
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* [[Applications|Installed Applications]]
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* [[UFRC_environment_module|HiPerGator ufrc Tools]]
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* [[Modules|Environment Modules System]]
  
* [[Installing Perl Modules|Installing Perl Modules]]
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* [[Compilers]]
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* [[Reference Data]]
* [[CUDA|CUDA Programming Guides]]
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* [[AI Reference Datasets]]
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=== Transfer Data ===
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* [[Transfer Data]]
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* [[Globus]]
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| scope="col" width="150" |
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* [[Samba Access]]
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=== Specific Research Areas ===
 
=== Specific Research Areas ===
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| [[Biology|Biological Research Computing]]
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* [[Biology|Biology]]
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* [[Nlp|Natural Language Processing]]
 
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* [[Galaxy|Galaxy Genomics Framework]]
 
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* [[BLASTDB|Blast Databases]]
 
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* [[:Category:Bioinformatics|Installed biological computing software]]
 
 
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Latest revision as of 14:09, 10 June 2022


Welcome to the University of Florida Research Computing Help and Documentation site. General information, policies, and purchase request forms are on our main web site. The information here is focused on particular applications, services, and usage examples. Provide Feedback.

For New Users

Interfaces and Access

Scheduler

Software and Reference Data

Transfer Data

Specific Research Areas