Difference between revisions of "UFRC Help and Documentation"

From UFRC
Jump to navigation Jump to search
 
(285 intermediate revisions by 12 users not shown)
Line 1: Line 1:
Welcome to the University of Florida High Performance Computing Center Wiki. This site provides documentation for various software applications and hardware configurations provided by the UF HPC Center. Please submit a request on our [http://bugzilla.hpc.ufl.edu Bugzilla] request system or send email to [mailto://support@hpc.ufl.edu Support].
+
Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Help and Documentation site. General information, announcements, and purchase request forms are on our [https://www.rc.ufl.edu main web site]. The information here is focused on particular applications, services, and usage examples. [https://support.rc.ufl.edu Provide Feedback].</span>
== Getting Started ==
+
<br>
* [[Getting Started]]
+
<!-- {{Note|Submit a support request at [https://support.rc.ufl.edu https://support.rc.ufl.edu]|warn}} -->
* [[Getting Help]]
+
<!-- {{Note|See an important message about EL7->EL8 migration on HiPerGator at [[Rolling Upgrade from RHEL7 to RHEL8]]|warn}} -->
* [[Policies]]
 
* [[Frequently Asked Questions]]
 
== System Information ==
 
Information on how to utilize our systems as well as technical information about the different hardware. There is also information for users on how to perform basic tasks on our systems.
 
  
* [[Schedulers]]
+
{| cellspacing="0" cellpadding="5"
* [[Job Submission Queues]]
+
|- valign="top"
* [[Sample Scripts | Sample Submission Script]]
+
| width="50%" |
* [[Cluster Monitoring]]
+
{| width="100%"
* [[Operating Environment]]
+
| style="width: 7%; vertical-align: top" | [[Image:Setup.png|frameless|upright=0.2]]
* [[Node Performance]]
+
| style="padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">FOR NEW USERS</h1>
* [[Hardware Testing]]
+
Guides to get you started with HPG, and best practices!
 +
<hr style="margin: 4px 0" />
 +
<span style="font-size: 12pt">'''[[Getting Started ]]''' | [[Training Videos]] | [[Training|Trainings & Events]] | [[Development_and_Testing|Interactive Development and Testing]] | [[Storage|Practical Storage Use]] </span>
 +
|}
 +
||
 +
{| width="100%"
 +
| style="width: 7%; vertical-align: top" | [[Image:Access.png|frameless|upright=0.2]]
 +
| style="padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">ACCESS</h1>
 +
How to connect to HPG with Duo, authenticate multiple connections, or check account.
 +
<hr style="margin: 4px 0" />
 +
<span style="font-size: 12pt">'''[[Authentication With MFA|Multi-Factor Authentication]]''' | [[SSH Multiplexing]] | [[Using SSH Keys To Access HPG | SSH Keys]] | [[Blocked Accounts]] | [[Federated_Account_Request|Federated Access]] and [[Federated_login|Login]] </span>
 +
|}
  
== Software and Libraries ==
+
|- valign="top"
* [[Installed Software]]
+
 
* [[CUDA]] Programming Guides
+
||
* [[Command List]]
+
{| width="100%"
* [[OpenMPI]]
+
| style="width: 7%; vertical-align: top" | [[Image:Question.png|frameless|upright=0.2]]
* [[OpenMP]]
+
| style="padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">HELP</h1>
 +
Resources to ask questions, get support, or communicate directly.
 +
<hr style="margin: 4px 0" />
 +
<span style="font-size: 12pt">'''[[Get_Help|How To Get Help]]'''  | [[AI Help]] | [[FAQ]] | <span class="plainlinks">[https://support.rc.ufl.edu/enter_bug.cgi Submit a Support Request] | [[HiPerGator Metrics]] | [[Remote Support]]</span></span>
 +
|}
 +
 
 +
||
 +
{| width="100%"
 +
| style="width: 7%; vertical-align: top" | [[Image:Inter.png|frameless|upright=0.2]]
 +
| style="padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">INTERFACES</h1>
 +
Guides for GUI/web interfaces you can run on HPG.
 +
<hr style="margin: 4px 0" />
 +
<span style="font-size: 12pt"> '''[[Jupyter_Notebooks| Jupyter (Python, R)]]''' | [[Galaxy|Galaxy Genomics Framework]] | [[Open OnDemand|OnDemand (Matlab, RStudio,...)]] | [[Managing Python environments and Jupyter_kernels | Conda and Jupyter Kernels ]] | [[GUI Programs|Running GUI Apps]] </span>
 +
|}
 +
 
 +
|- valign="top"
 +
 
 +
||
 +
{| width="100%"
 +
| style="width: 7%; vertical-align: top" | [[Image:Scheduler.png|frameless|upright=0.2]]
 +
| style="padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">SCHEDULER</h1>
 +
How to schedule and manage jobs and resources on HPG and more SLURM info.
 +
<hr style="margin: 4px 0" />
 +
<span style="font-size: 12pt">'''[[SLURM_Commands|Commands]]''' | [[Account_and_QOS_limits_under_SLURM|Account/QOS Limits]] | [[Available Node Features]] | [[Sample_SLURM_Scripts|Job Script Examples]] | [[SLURM_Job_Arrays|Job Arrays]] | [[GPU_Access|GPU Access]] | [[SLURM_Job_States|Job States]] | [[SLURM Partition Limits|Time Limits]]</span>
 +
|}
 +
 
 +
||
 +
{| width="100%"
 +
| style="width: 7%; vertical-align: top" | [[Image:Software.png|frameless|upright=0.2]]
 +
| style="padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">SOFTWARE AND REFERENCE DATA</h1>
 +
View installed programs and tools, how to utilize them, and reference data that they can run.
 +
<hr style="margin: 4px 0" />
 +
<span style="font-size: 12pt">'''[[Applications|Installed Applications]]''' | [[UFRC_environment_module|HiPerGator ufrc Tools]] | [[Modules|Environment Modules System]] | [[Reference Data]] | [[AI Reference Datasets]]</span>
 +
|}
 +
|- valign="top"
 +
||
 +
{| width="100%"
 +
| style="width: 7%; vertical-align: top" | [[Image:Transfer.png|frameless|upright=0.2]]
 +
| style="padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">TRANSFER DATA</h1>
 +
How to move different sizes of data to and from HPG.
 +
<hr style="margin: 4px 0" />
 +
<span style="font-size: 12pt">'''[[Transfer Data]]''' | [[Globus]] | [[Samba Access]] | [[Sharing Within A Cluster]] | [[Rsync]] </span>
 +
|}
 +
||
 +
{| width="100%"
 +
| style="width: 7%; vertical-align: top" | [[Image:Areas.png|frameless|upright=0.2]]
 +
| style="padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">SPECIFIC RESEARCH AREAS</h1>
 +
Highlighted areas of specialization commonly seen with HPG.
 +
<hr style="margin: 4px 0" />
 +
<span style="font-size: 12pt">'''[[Biology|Biology]]''' | '''[[Nlp|Natural Language Processing]]''' | '''[[Computer Vision]]''' </span>
 +
|}
 +
|- valign="top"
 +
|}
 +
__NOTOC__
 +
__NOEDITSECTION__

Latest revision as of 14:10, 19 March 2024

Welcome to the University of Florida Research Computing Help and Documentation site. General information, announcements, and purchase request forms are on our main web site. The information here is focused on particular applications, services, and usage examples. Provide Feedback.

Setup.png

FOR NEW USERS

Guides to get you started with HPG, and best practices!


Getting Started | Training Videos | Trainings & Events | Interactive Development and Testing | Practical Storage Use

Access.png

ACCESS

How to connect to HPG with Duo, authenticate multiple connections, or check account.


Multi-Factor Authentication | SSH Multiplexing | SSH Keys | Blocked Accounts | Federated Access and Login

Question.png

HELP

Resources to ask questions, get support, or communicate directly.


How To Get Help | AI Help | FAQ | Submit a Support Request | HiPerGator Metrics | Remote Support

Inter.png

INTERFACES

Guides for GUI/web interfaces you can run on HPG.


Jupyter (Python, R) | Galaxy Genomics Framework | OnDemand (Matlab, RStudio,...) | Conda and Jupyter Kernels | Running GUI Apps

Scheduler.png

SCHEDULER

How to schedule and manage jobs and resources on HPG and more SLURM info.


Commands | Account/QOS Limits | Available Node Features | Job Script Examples | Job Arrays | GPU Access | Job States | Time Limits

Software.png

SOFTWARE AND REFERENCE DATA

View installed programs and tools, how to utilize them, and reference data that they can run.


Installed Applications | HiPerGator ufrc Tools | Environment Modules System | Reference Data | AI Reference Datasets

Transfer.png

TRANSFER DATA

How to move different sizes of data to and from HPG.


Transfer Data | Globus | Samba Access | Sharing Within A Cluster | Rsync

Areas.png

SPECIFIC RESEARCH AREAS

Highlighted areas of specialization commonly seen with HPG.


Biology | Natural Language Processing | Computer Vision