Difference between revisions of "UFRC Help and Documentation"

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Welcome to the University of Florida High Performance Computing Center Wiki
 
  
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<!-- {{Note|Interactive Jobs in the GPU partition are limited to 6 hrs|news}} -->
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Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Help and Documentation site. General information, policies, and purchase request forms are on our [https://www.rc.ufl.edu main web site]. The information here is focused on particular applications, services, and usage examples. [https://support.rc.ufl.edu Provide Feedback].</span>
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{{Note|[[https://lists.ufl.edu/cgi-bin/wa?A0=HPC-ANNOUNCE-L HiPerGator News and Announcements]] |news}}
* [[Getting Started]]
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=== Getting Started ===
* [[Getting Help]]
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{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
* [[Policies]]
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* [[Installed Software]]
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* [[Common Problems]]
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* '''[[Getting Started ]]'''
* [[Frequently Asked Questions]]
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* [[Quick Start Guide]]
* [[Schedulers]]
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* [[New user training]]
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* [[Job Submission Queues]]
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* '''[[Training|Training, Events, Videos]]'''
* [[Getting_Started#Torque_Scheduler | Sample Submission Script]]
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* [[Development_and_Testing|Interactive Development and Testing]]
* [[Hardware]]
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* [[Storage|Practical Storage Use]]
* [[Shutdown | Shutdown Activities]]
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* [[Cluster Monitoring]]
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* '''[[Get_Help|How To Get Help]]'''</span>
* [[Operating Environment]]
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* <span class="plainlinks">[https://support.rc.ufl.edu/enter_bug.cgi Submit a Support Request]</span>
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* [[AI Help|AI Help]]
* [[Current Events]]
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* [[Administrivia]]
 
 
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==Recent News==
 
* Due to heavy spamming, we are now requiring that you send a request for an account on the wiki in order to edit the pages. You can send requests to support@hpc.ufl.edu.
 
* The UFHPC_SCRATCH Environment Variable has been instituted. Details are located on the [[Scratch]] space page.
 
==Multi-Processing==
 
* [[OpenMPI]]
 
* [[OpenMP]]
 
* [[OFED]]
 
* [[IB HCA Firmware]]
 
  
==Compilers==
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=== Interfaces and Access===
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{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #0021A5; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
! Language !! Compiler !! Version !! Path
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|-
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* [[Jupyter_Notebooks| Jupyter (Python, R)]]
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* [[Galaxy|Galaxy Genomics Framework]]
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* [[GPU_Access|GPU Access]]
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* [[GUI Programs|Running GUI Apps]]
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* [[Open OnDemand|OnDemand (Matlab, RStudio,...)]]
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* [[Authentication With MFA|Multi-Factor Authentication]]
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* [[SSH Multiplexing]]
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* [[Blocked Accounts]]
 
|-
 
|-
| Fortran || [[Intel]] || 9.1.037 || /opt/intel/fce/9.1.037/bin
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|}
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=== Scheduler ===
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|-
 
|-
| Fortran || [[Intel]] || 9.1.039 (32-bit) || /opt/intel/fc/9.1.039/bin
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* [[SLURM_Commands|SLURM Commands]]
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* [[Account_and_QOS_limits_under_SLURM|Account and QOS Limits Under SLURM]]
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* [[Large-Memory_SMP_Servers|Big Memory Partition]]
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* [[Available Node Features]]
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* [[Sample_SLURM_Scripts|SLURM Job Script Examples]]
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* [[SLURM_Job_Arrays|SLURM Job Arrays]]
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|}
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=== Software and Reference Data===
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|-
 
|-
| Fortran || [[GNU]] || 4.1.1-53 || /usr/bin/gfortran
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| scope="col" width="150" |
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* [[Applications|Installed Applications]]
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* [[UFRC_environment_module|HiPerGator ufrc Tools]]
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| scope="col" width="150" |
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* [[Modules|Environment Modules System]]
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| scope="col" width="150" |
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* [[Reference Data]]
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* [[AI Reference Datasets]]
 
|-
 
|-
| Fortran || [[GNU]] || 3.4.6-8 || /usr/bin/g77
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|}
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=== Transfer Data ===
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|-
 
|-
| C || [[Intel]] || 9.1.044 || /opt/intel/cce/9.1.044/bin
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| scope="col" width="150" |
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* [[Transfer Data]]
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| scope="col" width="150" |
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* [[Globus]]
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| scope="col" width="150" |
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* [[Samba Access]]
 
|-
 
|-
| C || [[GNU]] || 3.4.6 || /usr/bin/gcc
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|}
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=== Specific Research Areas ===
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|-
 
|-
| C++ || [[Intel]] || 9.1.044 || /opt/intel/cce/9.1.044/bin
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| scope="col" width="150" |  
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* [[Biology|Biocomputing]]
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| scope="col" width="150" |
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| scope="col" width="150" |
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* [[Nlp|Natural Language Processing]]
 
|-
 
|-
| C++ || [[GNU]] || 3.4.6 || /usr/bin/g++
 
 
|}
 
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Latest revision as of 16:10, 17 February 2022


Welcome to the University of Florida Research Computing Help and Documentation site. General information, policies, and purchase request forms are on our main web site. The information here is focused on particular applications, services, and usage examples. Provide Feedback.

Getting Started

Interfaces and Access

Scheduler

Software and Reference Data

Transfer Data

Specific Research Areas