Difference between revisions of "UFRC Help and Documentation"

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Welcome to the University of Florida High Performance Computing Center Wiki
 
  
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{{Note|[[:News:Latest|The latest HiPerGator News and Announcements]]|news}}
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<!-- {{Note|Interactive Jobs in the GPU partition are limited to 6 hrs|news}} -->
* [[Getting Started]]
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Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Help and Documentation site. The information here is focused on particular applications, services, and usage examples and complements more general policies and information found on our [https://www.rc.ufl.edu main web site]. It is used for information that changes more frequently and might become quickly dated or incorrect on the web site. This site is edited by individual UFRC staff members. If you find inaccuracies, errors, or omissions on this site please [https://support.rc.ufl.edu let us know].</span>
* [[Policies]]
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* [[Installed Software]]
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<span>[https://outlook.office365.com/owa/calendar/UFITResearchComputingSupport@uflorida.onmicrosoft.com/bookings/ Book an In-Person or Zoom support appointment.]</span>
* [[Common Problems]]
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=== Getting Started ===
* [[Frequently Asked Questions]]
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{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
* [[Schedulers]]
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* [[Job Submission Queues]]
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* [[Getting Started ]]
* [[Getting_Started#Torque_Scheduler | Sample Submission Script]]
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* [[Quick Start Guide]]
* [[Hardware]]
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* [[New user training]]
* [[Shutdown | Shutdown Activities]]
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* [[Cluster Monitoring]]
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* [[Training|Training, Events and How-To Videos]]
* [[Operating Environment]]
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* [[Development_and_Testing|Interactive Development and Testing]]
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* [[Storage|Practical Storage Use]]
* [[Current Events]]
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* [[Administrivia]]
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* [[AI Help|AI Help]]
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* <span class="plainlinks">[https://support.rc.ufl.edu/enter_bug.cgi Submit a Support Request]</span>
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* [[Support|All Support Options]]</span>
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==Recent News==
 
* Due to heavy spamming, we are now requiring that you send a request for an account on the wiki in order to edit the pages. You can send requests to support@hpc.ufl.edu.
 
* The UFHPC_SCRATCH Environment Variable has been instituted. Details are located on the [[Scratch]] space page.
 
==Multi-Processing==
 
* [[OpenMPI]]
 
* [[OpenMP]]
 
* [[OFED]]
 
* [[IB HCA Firmware]]
 
  
==Compilers==
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=== Interfaces and Access===
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{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #0021A5; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
! Language !! Compiler !! Version !! Path
 
 
|-
 
|-
| Fortran || [[Intel]] || 77/90 || /opt/intel/fce/9.1.037/bin
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* [[Jupyter_Notebooks| Jupyter (Python, R)]]
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* [[Galaxy|Galaxy Genomics Framework]]
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* [[GPU_Access|GPU Access]]
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| scope="col" width="150" |
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* [[GUI Programs|Running GUI Apps]]
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* [[Open OnDemand|OnDemand (Matlab, RStudio,...)]]
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| scope="col" width="150" |
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* [[Authentication With MFA|Multi-Factor Authentication]]
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* [[SSH Multiplexing]]
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* [[Blocked Accounts]]
 
|-
 
|-
| Fortran || [[Intel]] || 77/90 32-bit || /opt/intel/fc/9.1.039/bin
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|}
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=== Scheduler ===
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|-
 
|-
| Fortran || [[GNU]] || 95 || /usr/bin/gfortran
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| scope="col" width="150" |
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* [[SLURM_Commands|SLURM Commands]]
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* [[Account_and_QOS_limits_under_SLURM|Account and QOS Limits Under SLURM]]
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* [[Large-Memory_SMP_Servers|Big Memory Partition]]
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* [[Available Node Features]]
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| scope="col" width="150" |
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* [[Sample_SLURM_Scripts|SLURM Job Script Examples]]
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* [[SLURM_Job_Arrays|SLURM Job Arrays]]
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|}
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=== Software and Reference Data===
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{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #0021A5; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
 
|-
 
|-
| Fortran || [[GNU]] || 70 || /usr/bin/g77
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| scope="col" width="150" |
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* [[Applications|Installed Applications]]
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* [[UFRC_environment_module|HiPerGator ufrc Tools]]
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| scope="col" width="150" |
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* [[Modules|Environment Modules System]]
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| scope="col" width="150" |
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* [[Reference Data]]
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* [[AI Reference Datasets]]
 
|-
 
|-
| C || [[Intel]] || 9.1.044 || /opt/intel/cce/9.1.044/bin
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|}
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=== Transfer Data ===
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|-
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| scope="col" width="150" |
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* [[Transfer Data]]
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| scope="col" width="150" |
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* [[Globus]]
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| scope="col" width="150" |
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* [[Samba Access]]
 
|-
 
|-
| C || [[GNU]] || 3.4.6 || /usr/bin/gcc
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|}
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=== Specific Research Areas ===
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|-
 
|-
| C++ || [[Intel]] || 9.1.044 || /opt/intel/cce/9.1.044/bin
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| scope="col" width="150" |  
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* [[Biology|Biocomputing]]
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| scope="col" width="150" |
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| scope="col" width="150" |
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* [[Nlp|Natural Language Processing]]
 
|-
 
|-
| C++ || [[GNU]] || 3.4.6 || /usr/bin/g++
 
 
|}
 
|}
 
==System Connections==
 
[[Power Connections]]
 
 
==Collectl and Lustre==
 
[[Collectl_docs]] -- collectl general howto
 
 
[[Lustre_proc]] -- lustre internals for lustre /proc info
 

Latest revision as of 20:27, 7 December 2021


Welcome to the University of Florida Research Computing Help and Documentation site. The information here is focused on particular applications, services, and usage examples and complements more general policies and information found on our main web site. It is used for information that changes more frequently and might become quickly dated or incorrect on the web site. This site is edited by individual UFRC staff members. If you find inaccuracies, errors, or omissions on this site please let us know.

Book an In-Person or Zoom support appointment.

Getting Started

Interfaces and Access

Scheduler

Software and Reference Data

Transfer Data

Specific Research Areas