Difference between revisions of "UFRC Help and Documentation"

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Welcome to the University of Florida High Performance Computing Center Wiki
 
  
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<!-- {{Note|Interactive Jobs in the GPU partition are limited to 6 hrs|news}} -->
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Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Help and Documentation site. General information, policies, and purchase request forms are on our [https://www.rc.ufl.edu main web site]. The information here is focused on particular applications, services, and usage examples. [https://support.rc.ufl.edu Provide Feedback].</span>
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{{Note|[[https://lists.ufl.edu/cgi-bin/wa?A0=HPC-ANNOUNCE-L HiPerGator News and Announcements]] |news}}
* [[Getting Started]]
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=== For New Users ===
* [[Policies]]
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{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
* [[Installed Software]]
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* [[Common Problems]]
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* [[Frequently Asked Questions]]
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* '''[[Getting Started ]]'''
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* '''[[Training|Training, Events, Videos]]'''
* [[Job Submission Queues]]
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* [[New user training]]
* [[Getting_Started#Torque_Scheduler | Sample Submission Script]]
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* [[Hardware]]
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* [[Development_and_Testing|Interactive Development and Testing]]
* [[Shutdown | Shutdown Activities]]
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* [[Storage|Practical Storage Use]]
* [[Cluster Monitoring]]
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* '''[[Get_Help|How To Get Help]]'''</span>
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* <span class="plainlinks">[https://support.rc.ufl.edu/enter_bug.cgi Submit a Support Request]</span>
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* [[AI Help|AI Help]]
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|-
 
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==Recent News==
 
* Due to heavy spamming, we are now requiring that you send a request for an account on the wiki in order to edit the pages. You can send requests to support@hpc.ufl.edu.
 
* The UFHPC_SCRATCH Environment Variable has been instituted. Details are located on the [[Scratch]] space page.
 
==Multi-Processing==
 
* [[OpenMPI]]
 
* [[OpenMP]]
 
* [[OFED]]
 
* [[IB HCA Firmware]]
 
  
==Compilers==
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=== Interfaces and Access===
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{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #0021A5; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
! Language !! Compiler !! Version !! Path
 
 
|-
 
|-
| Fortran || [[Intel]] || 77/90 || /opt/intel/fce/9.1.037/bin
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* [[Jupyter_Notebooks| Jupyter (Python, R)]]
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* [[Galaxy|Galaxy Genomics Framework]]
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* [[Open OnDemand|OnDemand (Matlab, RStudio,...)]]
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* [[Managing Python environments and Jupyter_kernels | Conda and Jupyter Kernels ]]
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* [[GUI Programs|Running GUI Apps]]
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* [[GPU_Access|GPU Access]]
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| scope="col" width="150" |
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* [[Authentication With MFA|Multi-Factor Authentication]]
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* [[SSH Multiplexing]]
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* [[Blocked Accounts]]
 
|-
 
|-
| Fortran || [[Intel]] || 77/90 32-bit || /opt/intel/fc/9.1.039/bin
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|}
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=== Scheduler ===
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|-
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* [[SLURM_Commands|SLURM Commands]]
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* [[Account_and_QOS_limits_under_SLURM|Account and QOS Limits Under SLURM]]
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* [[Large-Memory_SMP_Servers|Big Memory Partition]]
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* [[Available Node Features]]
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* [[Sample_SLURM_Scripts|SLURM Job Script Examples]]
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* [[SLURM_Job_Arrays|SLURM Job Arrays]]
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|}
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=== Software and Reference Data===
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|-
 
|-
| Fortran || [[GNU]] || 90 || /usr/bin/gfortran
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* [[Applications|Installed Applications]]
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* [[UFRC_environment_module|HiPerGator ufrc Tools]]
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| scope="col" width="150" |
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* [[Modules|Environment Modules System]]
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| scope="col" width="150" |
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* [[Reference Data]]
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* [[AI Reference Datasets]]
 
|-
 
|-
| Fortran || [[GNU]] || 70 || /usr/bin/g77
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|}
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=== Transfer Data ===
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|-
 
|-
| C || [[Intel]] || &nbsp; || /opt/intel/cce/9.1.044/bin
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| scope="col" width="150" |
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* [[Transfer Data]]
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| scope="col" width="150" |
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* [[Globus]]
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| scope="col" width="150" |
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* [[Samba Access]]
 
|-
 
|-
| C || [[GNU]] || &nbsp; || /usr/bin/gcc
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|}
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=== Specific Research Areas ===
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|-
 
|-
| C++ || Intel || &nbsp; || /opt/intel/cce/9.1.044/bin
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| scope="col" width="150" |  
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* [[Biology|Biology]]
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| scope="col" width="150" |
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| scope="col" width="150" |
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* [[Nlp|Natural Language Processing]]
 
|-
 
|-
| C++ || [[GNU]] || &nbsp; || /usr/bin/g++
 
 
|}
 
|}
 
==System Connections==
 
[[Power Connections]]
 
 
==Collectl==
 
[[Collectl_docs]]
 

Latest revision as of 14:09, 10 June 2022


Welcome to the University of Florida Research Computing Help and Documentation site. General information, policies, and purchase request forms are on our main web site. The information here is focused on particular applications, services, and usage examples. Provide Feedback.

For New Users

Interfaces and Access

Scheduler

Software and Reference Data

Transfer Data

Specific Research Areas