Revision as of 17:14, 22 July 2022

Welcome to the University of Florida Research Computing Help and Documentation site. General information, announcements, and purchase request forms are on our main web site. The information here is focused on particular applications, services, and usage examples. Provide Feedback.

FOR NEW USERS

Guides to get you started with HPG, and best practices!

Getting Started | Training, Events, Videos | New user training | Interactive Development and Testing | Practical Storage Use

ACCESS

How to connect to HPG with Duo, authenticate multiple connections, or check account.

Multi-Factor Authentication | SSH Multiplexing | Blocked Accounts

HELP

Resources to ask questions, get support, or communicate directly.

How To Get Help | Submit a Support Request | AI Help | FAQ

INTERFACES

Guides for GUI/web interfaces you can run on HPG.

Jupyter (Python, R) | Galaxy Genomics Framework | OnDemand (Matlab, RStudio,...) | Conda and Jupyter Kernels | Running GUI Apps

SCHEDULER

How to schedule and manage jobs and resources on HPG and more SLURM info.

SOFTWARE AND REFERENCE DATA

View installed programs and tools, how to utilize them, and reference data that they can run.

Installed Applications | HiPerGator ufrc Tools | Environment Modules System | Reference Data | AI Reference Datasets

TRANSFER DATA

How to move different sizes of data to and from HPG.

Transfer Data | Globus | Samba Access

SPECIFIC RESEARCH AREAS

Highlighted areas of specialization commonly seen with HPG.

Biology | Natural Language Processing

@@ Line 1: / Line 1: @@
-[[Category:Docs]]
+Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Help and Documentation site. General information, announcements, and purchase request forms are on our [https://www.rc.ufl.edu main web site]. The information here is focused on particular applications, services, and usage examples. [https://support.rc.ufl.edu Provide Feedback].</span>
-__NOTOC__
+{| cellspacing="20" cellpadding="0" width="100%"
+|- valign="top"
+| width="50%" |
+{| width="100%"
+| style="width: 7%; vertical-align: top" | [[Image:Setup.png|frameless|upright=0.2]]
+| style="padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">FOR NEW USERS</h1>
+Guides to get you started with HPG, and best practices!
+<hr style="margin: 4px 0" />
+<span style="font-size: 12pt">'''[[Getting Started ]]''' | [[Training|Training, Events, Videos]] | [[New user training]] | [[Development_and_Testing|Interactive Development and Testing]] | [[Storage|Practical Storage Use]] </span>
+|}
+||
+{| width="100%"
+| style="width: 7%; vertical-align: top" | [[Image:Access.png|frameless|upright=0.2]]
+| style="padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">ACCESS</h1>
+How to connect to HPG with Duo, authenticate multiple connections, or check account.
+<hr style="margin: 4px 0" />
+<span style="font-size: 12pt">'''[[Authentication With MFA|Multi-Factor Authentication]]''' | [[SSH Multiplexing]] | [[Blocked Accounts]]</span>
+|}
+|- valign="top"
-Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Help and Documentation site. The information here is focused on particular applications, services, and usage examples and complements more general policies and information found on our [https://www.rc.ufl.edu main web site]. It is used for information that changes more frequently and might become quickly dated or incorrect on the web site. This site is edited by individual UFRC staff members. If you find inaccuracies, errors, or omissions on this site please [https://support.rc.ufl.edu let us know].</span>
+||
-=== Getting Started ===
+{| width="100%"
-{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
+| style="width: 7%; vertical-align: top" | [[Image:Question.png|frameless|upright=0.2]]
-|-
+| style="padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">HELP</h1>
-| scope="col" width="150" |
+Resources to ask questions, get support, or communicate directly.
-* [[Getting Started ]]
+<hr style="margin: 4px 0" />
-* [[Mailing Lists]]
+<span style="font-size: 12pt">'''[[Get_Help|How To Get Help]]''' | <span class="plainlinks">[https://support.rc.ufl.edu/enter_bug.cgi Submit a Support Request]</span> | [[AI Help|AI Help]] | [[FAQ]]</span>
-* [[New user training]]
-* [[Training|Training, Events and How-To Videos]]
-| scope="col" width="150" |
-* [[Non_Batch-System_Resources|Non-Batch System Resources]]
-* [[Development_and_Testing|Interactive Development and Testing]]
-* [[GUI Programs]]
-* [[Blocked Accounts]]
-| scope="col" width="150" |
-* [[SSH Key Creation (Windows)]]
-* <span class="plainlinks">[https://support.rc.ufl.edu/enter_bug.cgi Submit a Support Request]</span>
-* <span class="plainlinks">[https://www.rc.ufl.edu/services/procedures/storage/types/ Storage Types and Procedures]</span>
-* [[Storage|Practical Storage Use]]
-* <span class="plainlinks">[https://www.rc.ufl.edu/services/teaching-support/ Teaching Support]</span>
-|-
 |}
-=== Software and Reference Data===
+||
-Use the tools from [[UFRC environment module]] for convenience.
+{| width="100%"
-{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #0021A5; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
+| style="width: 7%; vertical-align: top" | [[Image:Inter.png|frameless|upright=0.2]]
-|-
+| style="padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">INTERFACES</h1>
-| scope="col" width="150" |
+Guides for GUI/web interfaces you can run on HPG.
-* [[Applications|Installed Applications]]
+<hr style="margin: 4px 0" />
-* [[Reference Data]]
+<span style="font-size: 12pt"> '''[[Jupyter_Notebooks| Jupyter (Python, R)]]''' | [[Galaxy|Galaxy Genomics Framework]] | [[Open OnDemand|OnDemand (Matlab, RStudio,...)]] | [[Managing Python environments and Jupyter_kernels | Conda and Jupyter Kernels ]] | [[GUI Programs|Running GUI Apps]] </span>
-* [[UFRC_environment_module|HiPerGator Tools]]
-| scope="col" width="150" |
-* [[Modules|Environment Modules System]]
-* [[Software Development]]
-* [[AI Support]]
-| scope="col" width="150" |
-* [[GPU_Access|GPU Access]]
-* [[Compilers|Available Compilers]]
-* [[Jupyter_Notebooks| Jupyter Notebooks]]
 |}
-=== Batch System ===
+|- valign="top"
-{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
-|-
+||
-| scope="col" width="150" |
+{| width="100%"
-* [[SLURM_Commands|SLURM Commands]]
+| style="width: 7%; vertical-align: top" | [[Image:Scheduler.png|frameless|upright=0.2]]
-* [[Using_Variables_in_SLURM_Jobs|Using Variables in SLURM]]
+| style="padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">SCHEDULER</h1>
-* [[SLURM_Job_Arrays|SLURM Job Arrays]]
+How to schedule and manage jobs and resources on HPG and more SLURM info.
-| scope="col" width="150" |
+<hr style="margin: 4px 0" />
-* [[Account_and_QOS_limits_under_SLURM|Account and QOS Limits Under SLURM]]
+<span style="font-size: 12pt">'''[[SLURM_Commands|SLURM Commands]]''' | [[Account_and_QOS_limits_under_SLURM|Account/QOS Limits Under SLURM]] | [[Large-Memory_SMP_Servers|Big Memory Partition]] | [[Available Node Features]] | [[Sample_SLURM_Scripts|SLURM Job Script Examples]] | [[SLURM_Job_Arrays|SLURM Job Arrays]] | [[GPU_Access|GPU Access]] </span>
-* [[Large-Memory_SMP_Servers|Big Memory Partition]]
-* [[Available Node Features]]
-| scope="col" width="150" |
-* [[Annotated_SLURM_Script|Annotated Job Script Walk-through]]
-* [[Sample_SLURM_Scripts|Sample SLURM Scripts]]
 |}
-=== Connecting and Data Transfer ===
+||
-{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #0021A5; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
+{| width="100%"
-|-
+| style="width: 7%; vertical-align: top" | [[Image:Software.png|frameless|upright=0.2]]
-| scope="col" width="150" |
+| style="padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">SOFTWARE AND REFERENCE DATA</h1>
-* [[Samba Access]]
+View installed programs and tools, how to utilize them, and reference data that they can run.
-| scope="col" width="150" |
+<hr style="margin: 4px 0" />
-* [[Globus]]
+<span style="font-size: 12pt">'''[[Applications|Installed Applications]]''' | [[UFRC_environment_module|HiPerGator ufrc Tools]] | [[Modules|Environment Modules System]] | [[Reference Data]] | [[AI Reference Datasets]]</span>
-| scope="col" width="150" |
-* [[Transfer Data]]
-|-
 |}
+|- valign="top"
-=== Specific Research Areas ===
+||
-{|  cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
+{| width="100%"
-|-
+| style="width: 7%; vertical-align: top" | [[Image:Transfer.png|frameless|upright=0.2]]
-| scope="col" width="150" |
+| style="padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">TRANSFER DATA</h1>
-* [[Biology|Biological Research Computing]]
+How to move different sizes of data to and from HPG.
-* [[:Category:Bioinformatics|Bioinformatics Software]]
+<hr style="margin: 4px 0" />
-| scope="col" width="150" |
+<span style="font-size: 12pt">'''[[Transfer Data]]''' | [[Globus]] | [[Samba Access]]</span>
-* [[R|R (BioConductor)]]
+|}
-* [[BLASTDB|Blast Databases]]
+||
-| scope="col" width="150" |
+{| width="100%"
-* [[Galaxy|Galaxy Genomics Framework]]
+| style="width: 7%; vertical-align: top" | [[Image:Areas.png|frameless|upright=0.2]]
-|-
+| style="padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">SPECIFIC RESEARCH AREAS</h1>
+Highlighted areas of specialization commonly seen with HPG.
+<hr style="margin: 4px 0" />
+<span style="font-size: 12pt">'''[[Biology|Biology]]''' | [[Nlp|Natural Language Processing]]</span>
+|}
+|- valign="top"
 |}
+__NOTOC__
+__NOEDITSECTION__

Difference between revisions of "UFRC Help and Documentation"