Difference between revisions of "UFRC Help and Documentation"

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Welcome to the University of Florida High Performance Computing Center Wiki. This site provides documentation for various software applications and hardware configurations provided by the UF HPC Center. Please submit a request on our [http://bugzilla.hpc.ufl.edu Bugzilla] request system or send email to [mailto://support@hpc.ufl.edu Support].
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[[Category:Docs]]
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__NOTOC__
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<!-- {{Note|Interactive Jobs in the GPU partition are limited to 6 hrs|news}} -->
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Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Help and Documentation site. General information, policies, and purchase request forms are on our [https://www.rc.ufl.edu main web site]. The information here is focused on particular applications, services, and usage examples. [https://support.rc.ufl.edu Provide Feedback].</span>
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{{Note|[[https://lists.ufl.edu/cgi-bin/wa?A0=HPC-ANNOUNCE-L HiPerGator News and Announcements]] |news}}
 
=== Getting Started ===
 
=== Getting Started ===
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{|  
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{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
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|-
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| scope="col" width="150" |
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* '''[[Getting Started ]]'''
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* [[Quick Start Guide]]
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* [[New user training]]
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| scope="col" width="150" |
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* '''[[Training|Training, Events, Videos]]'''
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* [[Development_and_Testing|Interactive Development and Testing]]
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* [[Storage|Practical Storage Use]]
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| scope="col" width="150" |
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* '''[[Get_Help|How To Get Help]]'''</span>
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* <span class="plainlinks">[https://support.rc.ufl.edu/enter_bug.cgi Submit a Support Request]</span>
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* [[AI Help|AI Help]]
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|-
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|}
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=== Interfaces and Access===
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{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #0021A5; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
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|-
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| scope="col" width="150" |
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* [[Jupyter_Notebooks| Jupyter (Python, R)]]
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* [[Galaxy|Galaxy Genomics Framework]]
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* [[GPU_Access|GPU Access]]
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| scope="col" width="150" |
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* [[Managing Python environments and Jupyter_kernels | Conda and Jupyter Kernels ]]
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* [[GUI Programs|Running GUI Apps]]
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* [[Open OnDemand|OnDemand (Matlab, RStudio,...)]]
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| scope="col" width="150" |
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* [[Authentication With MFA|Multi-Factor Authentication]]
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* [[SSH Multiplexing]]
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* [[Blocked Accounts]]
 
|-
 
|-
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|
 
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* [[Getting Started]]
 
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* [[Getting Help]]
 
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* [[Policies]]
 
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* [[Frequently Asked Questions]]
 
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* [[Password | Changing your Password]]
 
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* [[Samba Access]]
 
 
|}
 
|}
  
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=== System Information ===
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=== Scheduler ===
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Information on how to utilize our systems as well as technical information about the different hardware. There is also information for users on how to perform basic tasks on our systems.
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{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
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|-
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| scope="col" width="150" |
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* [[SLURM_Commands|SLURM Commands]]
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* [[Account_and_QOS_limits_under_SLURM|Account and QOS Limits Under SLURM]]
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| scope="col" width="150" |
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* [[Large-Memory_SMP_Servers|Big Memory Partition]]
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* [[Available Node Features]]
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| scope="col" width="150" |
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* [[Sample_SLURM_Scripts|SLURM Job Script Examples]]
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* [[SLURM_Job_Arrays|SLURM Job Arrays]]
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|}
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=== Software and Reference Data===
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{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #0021A5; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
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|-
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| scope="col" width="150" |
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* [[Applications|Installed Applications]]
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* [[UFRC_environment_module|HiPerGator ufrc Tools]]
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| scope="col" width="150" |
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* [[Modules|Environment Modules System]]
  
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* [[Schedulers]]
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| scope="col" width="150" |
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* [[Job Submission Queues]]
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* [[Reference Data]]
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* [[Sample Scripts | Sample Submission Script]]
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* [[AI Reference Datasets]]
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* [[Cluster Monitoring]]
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|-
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* [[Operating Environment]]
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|}
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* [[Node Performance]]
 
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* [[Hardware Testing]]
 
  
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=== Software and Libraries ===
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=== Transfer Data ===
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* [[Installed Software]]
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{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
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* [[CUDA]] Programming Guides
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|-
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* [[Command List]]
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| scope="col" width="150" |
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* [[OpenMPI]]
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* [[Transfer Data]]
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* [[OpenMP]]
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| scope="col" width="150" |
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* [[Installing Perl Modules]] Installing Perl Modules as a Normal User
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* [[Globus]]
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* [[Compilers]]
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| scope="col" width="150" |
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* [[Galaxy]]
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* [[Samba Access]]
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|-
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|}
  
 
=== Specific Research Areas ===
 
=== Specific Research Areas ===
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* [[Biology|Biological Research Computing]]
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{|  cellpadding=10 width="100%" style="background-color: #FFF; border-color: #0021A5; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
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|-
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| scope="col" width="150" |
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* [[Biology|Biocomputing]]
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| scope="col" width="150" |
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| scope="col" width="150" |
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* [[Nlp|Natural Language Processing]]
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|-
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|}

Revision as of 16:57, 24 May 2022


Welcome to the University of Florida Research Computing Help and Documentation site. General information, policies, and purchase request forms are on our main web site. The information here is focused on particular applications, services, and usage examples. Provide Feedback.

[HiPerGator News and Announcements]

Getting Started

Interfaces and Access

Scheduler

Software and Reference Data

Transfer Data

Specific Research Areas

Retrieved from "https://help.rc.ufl.edu/mediawiki/index.php?title=UFRC_Help_and_Documentation&oldid=22549"