Difference between revisions of "UFRC Help and Documentation"

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[[Category:Docs]]
 
[[Category:Docs]]
 
__NOTOC__
 
__NOTOC__
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{{Note|Interactive Jobs in the GPU partition are limited to 6 hrs|news}}
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Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Help and Documentation site. The information here is focused on particular applications, services, and usage examples and complements more general policies and information found on our [https://www.rc.ufl.edu main web site]. It is used for information that changes more frequently and might become quickly dated or incorrect on the web site. This site is edited by individual UFRC staff members. If you find inaccuracies, errors, or omissions on this site please [https://support.rc.ufl.edu let us know].</span>
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<!-- {{Note|Interactive Jobs in the GPU partition are limited to 6 hrs|news}} -->
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Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Help and Documentation site. General information, policies, and purchase request forms are on our [https://www.rc.ufl.edu main web site]. The information here is focused on particular applications, services, and usage examples. [https://support.rc.ufl.edu Provide Feedback].</span>
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{{Note|[[https://lists.ufl.edu/cgi-bin/wa?A0=HPC-ANNOUNCE-L HiPerGator News and Announcements]] |news}}
 
=== Getting Started ===
 
=== Getting Started ===
 
{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"  
 
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|-
 
|-
 
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* [[Getting Started ]]
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* '''[[Getting Started ]]'''
 
* [[Quick Start Guide]]
 
* [[Quick Start Guide]]
 
* [[New user training]]
 
* [[New user training]]
 
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| scope="col" width="150" |
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* [[Training|Training, Events and How-To Videos]]
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* '''[[Training|Training, Events, Videos]]'''
 
* [[Development_and_Testing|Interactive Development and Testing]]
 
* [[Development_and_Testing|Interactive Development and Testing]]
 
* [[Storage|Practical Storage Use]]
 
* [[Storage|Practical Storage Use]]
 
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* '''[[Get_Help|How To Get Help]]'''</span>
 
* <span class="plainlinks">[https://support.rc.ufl.edu/enter_bug.cgi Submit a Support Request]</span>
 
* <span class="plainlinks">[https://support.rc.ufl.edu/enter_bug.cgi Submit a Support Request]</span>
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* <span class="plainlinks">[https://www.rc.ufl.edu/help/remote-support/ Remote Support]</span>
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* [[AI Help|AI Help]]
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* <span class="plainlinks">[https://www.rc.ufl.edu/services/teaching-support/ Teaching Support]</span>
 
 
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|-
 
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=== Interfaces and Access===
 
=== Interfaces and Access===
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|-
 
|-
 
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* [[Jupyter_Notebooks| Jupyter Notebooks]]
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* [[Jupyter_Notebooks| Jupyter (Python, R)]]
 
* [[Galaxy|Galaxy Genomics Framework]]
 
* [[Galaxy|Galaxy Genomics Framework]]
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* [[GPU_Access|GPU Access]]
 
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| scope="col" width="150" |
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* [[GUI Programs]]
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* [[GUI Programs|Running GUI Apps]]
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* [[Open OnDemand]]
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* [[Open OnDemand|OnDemand (Matlab, RStudio,...)]]
 
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| scope="col" width="150" |
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* [[Authentication With MFA|Multi-Factor Authentication]]
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* [[SSH Multiplexing]]
 
* [[Blocked Accounts]]
 
* [[Blocked Accounts]]
 
|-
 
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* [[SLURM_Commands|SLURM Commands]]
 
* [[SLURM_Commands|SLURM Commands]]
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* [[Using_Variables_in_SLURM_Jobs|Using Variables in SLURM]]
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* [[Account_and_QOS_limits_under_SLURM|Account and QOS Limits Under SLURM]]
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* [[SLURM_Job_Arrays|SLURM Job Arrays]]
 
 
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* [[Account_and_QOS_limits_under_SLURM|Account and QOS Limits Under SLURM]]
 
 
* [[Large-Memory_SMP_Servers|Big Memory Partition]]
 
* [[Large-Memory_SMP_Servers|Big Memory Partition]]
 
* [[Available Node Features]]
 
* [[Available Node Features]]
 
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| scope="col" width="150" |
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* [[Annotated_SLURM_Script|Annotated Job Script Walk-through]]
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* [[Sample_SLURM_Scripts|SLURM Job Script Examples]]
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* [[Sample_SLURM_Scripts|Sample SLURM Scripts]]
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* [[SLURM_Job_Arrays|SLURM Job Arrays]]
 
|}
 
|}
  
 
=== Software and Reference Data===
 
=== Software and Reference Data===
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|-
 
|-
 
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* [[Applications|Installed Applications]]
 
* [[Applications|Installed Applications]]
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* [[Reference Data]]
 
 
* [[UFRC_environment_module|HiPerGator ufrc Tools]]
 
* [[UFRC_environment_module|HiPerGator ufrc Tools]]
 
| scope="col" width="150" |
 
| scope="col" width="150" |
 
* [[Modules|Environment Modules System]]
 
* [[Modules|Environment Modules System]]
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* [[Software Development]]
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* [[AI Support]]
 
 
| scope="col" width="150" |
 
| scope="col" width="150" |
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* [[GPU_Access|GPU Access]]
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* [[Reference Data]]
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* [[Compilers|Available Compilers]]
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* [[AI Reference Datasets]]
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|-
 
|}
 
|}
  
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=== Data Transfer ===
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=== Transfer Data ===
 
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* [[Biology|Biological Research Computing]]
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* [[Biology|Biocomputing]]
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* [[:Category:Bioinformatics|Bioinformatics Software]]
 
 
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* [[R|R (BioConductor)]]
 
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* [[BLASTDB|Blast Databases]]
 
 
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* [[Nlp|Natural Language Processing]]
 
* [[Nlp|Natural Language Processing]]
 
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Revision as of 16:10, 17 February 2022


Welcome to the University of Florida Research Computing Help and Documentation site. General information, policies, and purchase request forms are on our main web site. The information here is focused on particular applications, services, and usage examples. Provide Feedback.

[HiPerGator News and Announcements]

Getting Started

Interfaces and Access

Scheduler

Software and Reference Data

Transfer Data

Specific Research Areas

Retrieved from "https://help.rc.ufl.edu/mediawiki/index.php?title=UFRC_Help_and_Documentation&oldid=22118"