Difference between revisions of "UFRC Help and Documentation"

From UFRC
Jump to navigation Jump to search
m
(109 intermediate revisions by 6 users not shown)
Line 1: Line 1:
 +
[[Category:Docs]]
 
__NOTOC__
 
__NOTOC__
−
Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Help and Documentation site. The information here is focused on particular applications, services, and usage examples and complements more general policies and information found on our [https://www.rc.ufl.edu main web site]. It is used for information that changes more frequently and might become quickly dated or incorrect on the web site. This site is edited by individual UFRC staff members. If you find inaccuracies, errors, or omissions on this site please [https://support.rc.ufl.edu let us know].</span>
 
−
 
−
=[[HiPerGator2.0|HiPerGator 2.0 Information]]=
 
−
<!--
 
−
=== HiPerGator 2.0 Information ===
 
−
{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #0021A5; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
 
−
| scope="col" width="150" |
 
−
*
 
−
|}
 
−
-->
 
  
 +
<!-- {{Note|Interactive Jobs in the GPU partition are limited to 6 hrs|news}} -->
 +
Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Help and Documentation site. General information, policies, and purchase request forms are on our [https://www.rc.ufl.edu main web site]. The information here is focused on particular applications, services, and usage examples. [https://support.rc.ufl.edu Provide Feedback].</span>
 +
{{Note|[[https://lists.ufl.edu/cgi-bin/wa?A0=HPC-ANNOUNCE-L HiPerGator News and Announcements]] |news}}
 
=== Getting Started ===
 
=== Getting Started ===
 
{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"  
 
{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"  
 
|-
 
|-
 
| scope="col" width="150" |
 
| scope="col" width="150" |
−
* [[Getting Started ]]
+
* '''[[Getting Started ]]'''
−
* [[Mailing Lists]]
+
* [[Quick Start Guide]]
−
* [[Events_Calendar]]
+
* [[New user training]]
−
* [[Training]]
 
 
| scope="col" width="150" |
 
| scope="col" width="150" |
−
* [[SLURM_Commands|SLURM Commands]]
+
* '''[[Training|Training, Events, Videos]]'''
−
* [[Non_Batch-System_Resources|Non-Batch System Resources]]
 
 
* [[Development_and_Testing|Interactive Development and Testing]]
 
* [[Development_and_Testing|Interactive Development and Testing]]
−
* [[GUI Partition|GUI Programs]]
+
* [[Storage|Practical Storage Use]]
 
| scope="col" width="150" |
 
| scope="col" width="150" |
−
* [[Password | Change your Password]]
+
* '''[[Get_Help|How To Get Help]]'''</span>
−
* <span class="plainlinks">[https://support.rc.ufl.edu/enter_bug.cgi Open a Support Request]</span>
+
* <span class="plainlinks">[https://support.rc.ufl.edu/enter_bug.cgi Submit a Support Request]</span>
−
 
+
* [[AI Help|AI Help]]
 
|-
 
|-
 
|}
 
|}
  
−
=== Software and Libraries ===
+
=== Interfaces and Access===
 
{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #0021A5; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
 
{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #0021A5; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
 
|-
 
|-
 
| scope="col" width="150" |
 
| scope="col" width="150" |
−
* [[Installed Software]]
+
* [[Jupyter_Notebooks| Jupyter (Python, R)]]
 +
* [[Galaxy|Galaxy Genomics Framework]]
 +
* [[GPU_Access|GPU Access]]
 
| scope="col" width="150" |
 
| scope="col" width="150" |
−
* [[Modules|Environment Modules System]]
+
* [[GUI Programs|Running GUI Apps]]
 +
* [[Open OnDemand|OnDemand (Matlab, RStudio,...)]]
 
| scope="col" width="150" |
 
| scope="col" width="150" |
−
* [[GPU_Access|GPU Access]]
+
* [[Authentication With MFA|Multi-Factor Authentication]]
 +
* [[SSH Multiplexing]]
 +
* [[Blocked Accounts]]
 +
|-
 
|}
 
|}
  
−
=== Batch System ===
+
=== Scheduler ===
 
{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
 
{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
 
|-
 
|-
 
| scope="col" width="150" |
 
| scope="col" width="150" |
−
* [[:Category:SLURM|SLURM Category]]
+
* [[SLURM_Commands|SLURM Commands]]
−
* [[Billed Usage]]
+
* [[Account_and_QOS_limits_under_SLURM|Account and QOS Limits Under SLURM]]
 
| scope="col" width="150" |
 
| scope="col" width="150" |
−
* [[Sample_SLURM_Scripts|Sample SLURM Scripts]]
+
* [[Large-Memory_SMP_Servers|Big Memory Partition]]
−
* [[Annotated_SLURM_Script|Annotated Job Script Example]]
+
* [[Available Node Features]]
 
| scope="col" width="150" |
 
| scope="col" width="150" |
−
* [[Large-Memory_SMP_Servers|Big Memory Queue]]
+
* [[Sample_SLURM_Scripts|SLURM Job Script Examples]]
 +
* [[SLURM_Job_Arrays|SLURM Job Arrays]]
 +
|}
 +
 
 +
=== Software and Reference Data===
 +
{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #0021A5; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
 +
|-
 +
| scope="col" width="150" |
 +
* [[Applications|Installed Applications]]
 +
* [[UFRC_environment_module|HiPerGator ufrc Tools]]
 
| scope="col" width="150" |
 
| scope="col" width="150" |
−
* [[PBS2SLURM_Command_Reference|Moab (PBS) to SLURM command reference]]
+
* [[Modules|Environment Modules System]]
−
* [[NCU and QOS limits under SLURM]]
+
 
 +
| scope="col" width="150" |
 +
* [[Reference Data]]
 +
* [[AI Reference Datasets]]
 +
|-
 
|}
 
|}
  
−
=== Connecting and Data Transfer ===
+
=== Transfer Data ===
−
{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #0021A5; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"  
+
{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"  
 
|-
 
|-
 
| scope="col" width="150" |
 
| scope="col" width="150" |
−
* [[Samba Access]]
 
 
* [[Transfer Data]]
 
* [[Transfer Data]]
 
| scope="col" width="150" |
 
| scope="col" width="150" |
 
* [[Globus]]
 
* [[Globus]]
 
| scope="col" width="150" |
 
| scope="col" width="150" |
−
* [[PuTTY|Using PuTTY for SSH]]
+
* [[Samba Access]]
−
* [[GatorBox]]
 
 
|-
 
|-
 
|}
 
|}
  
 
=== Specific Research Areas ===
 
=== Specific Research Areas ===
−
{|  cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
+
{|  cellpadding=10 width="100%" style="background-color: #FFF; border-color: #0021A5; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
 
|-
 
|-
−
| width="150" | [[Biology|Biological Research Computing]]
 
 
| scope="col" width="150" |  
 
| scope="col" width="150" |  
 +
* [[Biology|Biocomputing]]
 
| scope="col" width="150" |
 
| scope="col" width="150" |
−
|-
 
−
| scope="col" width="150" |
 
−
* [[Galaxy|Galaxy Genomics Framework]]
 
−
* [[R|R (BioConductor)]]
 
−
|
 
−
* [[BLASTDB|Blast Databases]]
 
 
| scope="col" width="150" |
 
| scope="col" width="150" |
−
* [[:Category:Bioinformatics|Bioinformatics Software]]
+
* [[Nlp|Natural Language Processing]]
 
|-
 
|-
 
|}
 
|}

Revision as of 16:10, 17 February 2022


Welcome to the University of Florida Research Computing Help and Documentation site. General information, policies, and purchase request forms are on our main web site. The information here is focused on particular applications, services, and usage examples. Provide Feedback.

[HiPerGator News and Announcements]

Getting Started

Interfaces and Access

Scheduler

Software and Reference Data

Transfer Data

Specific Research Areas

Retrieved from "https://help.rc.ufl.edu/mediawiki/index.php?title=UFRC_Help_and_Documentation&oldid=22118"