Difference between revisions of "UFRC Help and Documentation"

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Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Wiki. The information here augments what is found on our [http://www.hpc.ufl.edu web site] with information we think is best provided in a less formal and official context.  It is used for information that changes rapidly and might become quickly dated or incorrect on the web site.  While there is good and helpful information here, you ''will'' find text that has not been proofed to the same standards that we try to maintain on our web site. We hope you find it helpful.</span>
 
  
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=== HiPerGator 2.0 Information ===
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<!-- {{Note|Interactive Jobs in the GPU partition are limited to 6 hrs|news}} -->
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Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Help and Documentation site. General information, policies, and purchase request forms are on our [https://www.rc.ufl.edu main web site]. The information here is focused on particular applications, services, and usage examples. [https://support.rc.ufl.edu Provide Feedback].</span>
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{{Note|[[https://lists.ufl.edu/cgi-bin/wa?A0=HPC-ANNOUNCE-L HiPerGator News and Announcements]] |news}}
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=== Getting Started ===
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* '''[[Getting Started ]]'''
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* [[Quick Start Guide]]
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* [[New user training]]
 
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* [[HiPerGator2.0|HiPerGator 2.0 Information]]
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* '''[[Training|Training, Events, Videos]]'''
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* [[Sample_SLURM_Scripts|Sample SLURM Scripts]]
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* [[Development_and_Testing|Interactive Development and Testing]]
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* [[Storage|Practical Storage Use]]
 
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* [[:Category:SLURM|SLURM Documentation]]
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* '''[[Get_Help|How To Get Help]]'''</span>
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* [[PBS2SLURM_Command_Reference|Moab (PBS) to SLURM command reference]]
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* <span class="plainlinks">[https://support.rc.ufl.edu/enter_bug.cgi Submit a Support Request]</span>
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* [[AI Help|AI Help]]
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=== Getting Started ===
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=== Interfaces and Access===
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* [[Getting Started ]]
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* [[Jupyter_Notebooks| Jupyter (Python, R)]]
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* [[Moab Command Summary]]
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* [[Galaxy|Galaxy Genomics Framework]]
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*[[Non_Batch-System_Resources|Non-Batch System Resources]]
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* [[GPU_Access|GPU Access]]
 
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* [[Mailing Lists]]
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* [[GUI Programs|Running GUI Apps]]
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* [[Events_Calendar]]
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* [[Open OnDemand|OnDemand (Matlab, RStudio,...)]]
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* [[Training]]
 
 
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* [[Password | Changing your Password]]
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* [[Authentication With MFA|Multi-Factor Authentication]]
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* <span class="plainlinks">[http://support.rc.ufl.edu Open a Support Request]</span>
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* [[SSH Multiplexing]]
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* [http://rc.ufl.edu/jobstatus/ View Job Status]
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* [[Blocked Accounts]]
 
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=== Software and Libraries ===
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=== Scheduler ===
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* [[Installed Software]]
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* [[SLURM_Commands|SLURM Commands]]
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* [[Account_and_QOS_limits_under_SLURM|Account and QOS Limits Under SLURM]]
 
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* [[Modules|Environment Modules System]]
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* [[Large-Memory_SMP_Servers|Big Memory Partition]]
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* [[Available Node Features]]
 
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* [[CUDA|GPUs and CUDA]]
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* [[Sample_SLURM_Scripts|SLURM Job Script Examples]]
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* [[SLURM_Job_Arrays|SLURM Job Arrays]]
 
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=== Batch System ===
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=== Software and Reference Data===
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*[[Queues|Queue information]]
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* [[Applications|Installed Applications]]
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* [[Torque_Job_Arrays|Job Arrays]]
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* [[UFRC_environment_module|HiPerGator ufrc Tools]]
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* [[PBS_$TMPDIR|Using TMPDIR Variable]]
 
 
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* [[Annotated_PBS_Script|Annotated Job Script Example]]
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* [[Modules|Environment Modules System]]
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* [[PBS_Directives|Basic PBS Directives]]
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* [[Billed Usage]]
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* [[Reference Data]]
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* [[Large-Memory_SMP_Servers|Big Memory Queue]]
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* [[AI Reference Datasets]]
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=== Connecting and Data Transfer ===
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=== Transfer Data ===
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* [[Samba Access]]
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* [[Transfer Data]]
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* [[FileZilla|SFTP Transfers with FileZilla]]
 
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* [[Rsync]]
 
 
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* [[Globus]]
 
* [[Globus]]
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* [[GUI Programs|GUI Programs and X11]]
 
 
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* [[PuTTY|Using PuTTY for SSH]]
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* [[Samba Access]]
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* [[GatorBox]]
 
 
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=== Specific Research Areas ===
 
=== Specific Research Areas ===
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| width="150" | [[Biology|Biological Research Computing]]
 
 
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* [[Biology|Biocomputing]]
 
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* [[Galaxy|Galaxy Genomics Framework]]
 
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* [[R|R (BioConductor)]]
 
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* [[BLASTDB|Blast Databases]]
 
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* [[Transfer_NGS_Sequence_Data_to_HPC|Data Transfer]]
 
 
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* [[:Category:Bioinformatics|Bioinformatics Software]]
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* [[Nlp|Natural Language Processing]]
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* [[Sharing Files]]
 
 
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Revision as of 16:10, 17 February 2022


Welcome to the University of Florida Research Computing Help and Documentation site. General information, policies, and purchase request forms are on our main web site. The information here is focused on particular applications, services, and usage examples. Provide Feedback.

[HiPerGator News and Announcements]

Getting Started

Interfaces and Access

Scheduler

Software and Reference Data

Transfer Data

Specific Research Areas

Retrieved from "https://help.rc.ufl.edu/mediawiki/index.php?title=UFRC_Help_and_Documentation&oldid=22118"