Difference between revisions of "UFRC Help and Documentation"

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[[Category:Docs]]
 
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Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Wiki. The information here augments what is found on our [http://www.hpc.ufl.edu web site] with information we think is best provided in a less formal and official context. It is used for information that changes rapidly and might become quickly dated or incorrect on the web site. While there is good and helpful information here, you ''will'' find text that has not been proofed to the same standards that we try to maintain on our web site. We hope you find it helpful.</span>
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<!-- {{Note|Interactive Jobs in the GPU partition are limited to 6 hrs|news}} -->
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Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Help and Documentation site. General information, policies, and purchase request forms are on our [https://www.rc.ufl.edu main web site]. The information here is focused on particular applications, services, and usage examples. [https://support.rc.ufl.edu Provide Feedback].</span>
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{{Note|[[https://lists.ufl.edu/cgi-bin/wa?A0=HPC-ANNOUNCE-L HiPerGator News and Announcements]] |news}}
 
=== Getting Started ===
 
=== Getting Started ===
 
{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"  
 
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* [[Getting Started]]
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* '''[[Getting Started ]]'''
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* [[Moab Command Summary]]
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* [[Quick Start Guide]]
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* [[New user training]]
 
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* [[Mailing Lists]]
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* '''[[Training|Training, Events, Videos]]'''
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* [[Training]]
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* [[Development_and_Testing|Interactive Development and Testing]]
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* [[Events_Calendar]]
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* [[Storage|Practical Storage Use]]
 
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* [[Password | Changing your Password]]
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* '''[[Get_Help|How To Get Help]]'''</span>
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* <span class="plainlinks">[http://support.rc.ufl.edu Open a Support Request]</span>
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* <span class="plainlinks">[https://support.rc.ufl.edu/enter_bug.cgi Submit a Support Request]</span>
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* [[AI Help|AI Help]]
 
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=== Software and Libraries ===
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=== Interfaces and Access===
 
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* [[Installed Software]]
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* [[Jupyter_Notebooks| Jupyter (Python, R)]]
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* [[Galaxy|Galaxy Genomics Framework]]
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* [[GPU_Access|GPU Access]]
 
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* [[Modules|Environment Modules System]]
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* [[GUI Programs|Running GUI Apps]]
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* [[Open OnDemand|OnDemand (Matlab, RStudio,...)]]
 
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* [[CUDA|GPUs and CUDA]]
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* [[Authentication With MFA|Multi-Factor Authentication]]
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* [[SSH Multiplexing]]
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* [[Blocked Accounts]]
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=== Batch System ===
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=== Scheduler ===
 
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* [[Torque_Job_Arrays|Job Arrays]]
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* [[SLURM_Commands|SLURM Commands]]
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* [[PBS_$TMPDIR|Using TMPDIR Variable]]
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* [[Account_and_QOS_limits_under_SLURM|Account and QOS Limits Under SLURM]]
 
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* [[Annotated_PBS_Script|Annotated Job Script Example]]
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* [[Large-Memory_SMP_Servers|Big Memory Partition]]
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* [[PBS_Directives|Basic PBS Directives]]
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* [[Available Node Features]]
 
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* [[Billed Usage]]
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* [[Sample_SLURM_Scripts|SLURM Job Script Examples]]
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* [[Large-Memory_SMP_Servers|Big Memory Queue]]
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* [[SLURM_Job_Arrays|SLURM Job Arrays]]
 
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=== Connecting and Data Transfer ===
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=== Software and Reference Data===
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* [[Samba Access]]
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* [[Applications|Installed Applications]]
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* [[FileZilla|SFTP Transfers with FileZilla]]
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* [[UFRC_environment_module|HiPerGator ufrc Tools]]
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* [[Modules|Environment Modules System]]
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* [[Reference Data]]
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* [[AI Reference Datasets]]
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=== Transfer Data ===
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* [[Transfer Data]]
 
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* [[Globus]]
 
* [[Globus]]
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* [[GUI Programs|GUI Programs and X11]]
 
 
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* [[PuTTY|Using PuTTY for SSH]]
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* [[Samba Access]]
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* [[OwnCloud]]
 
 
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=== Specific Research Areas ===
 
=== Specific Research Areas ===
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| width="150" | [[Biology|Biological Research Computing]]
 
 
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* [[Biology|Biocomputing]]
 
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* [[Galaxy|Galaxy Genomics Framework]]
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* [[Nlp|Natural Language Processing]]
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* [[R|R (BioConductor)]]
 
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* [[BLASTDB|Blast Databases]]
 
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* [[Transfer_NGS_Sequence_Data_to_HPC|Data Transfer]]
 
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* [[:Category:Bioinformatics|Bioinformatics Software]]
 
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* [[Sharing Files]]
 
 
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[[Privacy_policy|privacy policy]]
 

Revision as of 16:10, 17 February 2022


Welcome to the University of Florida Research Computing Help and Documentation site. General information, policies, and purchase request forms are on our main web site. The information here is focused on particular applications, services, and usage examples. Provide Feedback.

[HiPerGator News and Announcements]

Getting Started

Interfaces and Access

Scheduler

Software and Reference Data

Transfer Data

Specific Research Areas

Retrieved from "https://help.rc.ufl.edu/mediawiki/index.php?title=UFRC_Help_and_Documentation&oldid=22118"