Difference between revisions of "UFRC Help and Documentation"

From UFRC
Jump to navigation Jump to search
(235 intermediate revisions by 9 users not shown)
Line 1: Line 1:
−
{|align=right
+
[[Category:Docs]]
−
  |__TOC__
+
__NOTOC__
−
  |}
 
−
Welcome to the University of Florida High Performance Computing Center Wiki
 
  
−
{|
+
{{Note|[[:News:Latest|The latest HiPerGator News and Announcements]]|news}}
−
|-valign="top"
+
 
−
|
+
<!-- {{Note|Interactive Jobs in the GPU partition are limited to 6 hrs|news}} -->
−
* [[Getting Started]]
+
Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Help and Documentation site. The information here is focused on particular applications, services, and usage examples and complements more general policies and information found on our [https://www.rc.ufl.edu main web site]. It is used for information that changes more frequently and might become quickly dated or incorrect on the web site. This site is edited by individual UFRC staff members. If you find inaccuracies, errors, or omissions on this site please [https://support.rc.ufl.edu let us know].</span>
−
* [[Getting Help]]
+
 
−
* [[Policies]]
+
<span>[https://outlook.office365.com/owa/calendar/UFITResearchComputingSupport@uflorida.onmicrosoft.com/bookings/ Book an In-Person or Zoom support appointment.]</span>
−
* [[Installed Software]]
+
=== Getting Started ===
−
* [[Frequently Asked Questions]]
+
{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"  
−
* [[Schedulers]]
+
|-
−
||
+
| scope="col" width="150" |
−
* [[Job Submission Queues]]
+
* [[Getting Started ]]
−
* [[Sample Scripts | Sample Submission Script]]
+
* [[Quick Start Guide]]
−
* [[Cluster Monitoring]]
+
* [[New user training]]
−
* [[Operating Environment]]
+
| scope="col" width="150" |
−
* [[Node Performance]]
+
* [[Training|Training, Events and How-To Videos]]
−
* [[CUDA]] Programming Guides
+
* [[Development_and_Testing|Interactive Development and Testing]]
−
||
+
* [[Storage|Practical Storage Use]]
−
* [[Administrivia]]
+
| scope="col" width="150" |
−
* [[Hardware Testing]]
+
* [[AI Help|AI Help]]
−
* [[Command List]]
+
* <span class="plainlinks">[https://support.rc.ufl.edu/enter_bug.cgi Submit a Support Request]</span>
 +
* [[Support|All Support Options]]</span>
 +
|-
 +
|}
 +
 
 +
=== Interfaces and Access===
 +
{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #0021A5; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
 +
|-
 +
| scope="col" width="150" |
 +
* [[Jupyter_Notebooks| Jupyter (Python, R)]]
 +
* [[Galaxy|Galaxy Genomics Framework]]
 +
* [[GPU_Access|GPU Access]]
 +
| scope="col" width="150" |
 +
* [[GUI Programs|Running GUI Apps]]
 +
* [[Open OnDemand|OnDemand (Matlab, RStudio,...)]]
 +
| scope="col" width="150" |
 +
* [[Authentication With MFA|Multi-Factor Authentication]]
 +
* [[SSH Multiplexing]]
 +
* [[Blocked Accounts]]
 +
|-
 
|}
 
|}
  
 +
=== Scheduler ===
 +
{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
 +
|-
 +
| scope="col" width="150" |
 +
* [[SLURM_Commands|SLURM Commands]]
 +
* [[Account_and_QOS_limits_under_SLURM|Account and QOS Limits Under SLURM]]
 +
| scope="col" width="150" |
 +
* [[Large-Memory_SMP_Servers|Big Memory Partition]]
 +
* [[Available Node Features]]
 +
| scope="col" width="150" |
 +
* [[Sample_SLURM_Scripts|SLURM Job Script Examples]]
 +
* [[SLURM_Job_Arrays|SLURM Job Arrays]]
 +
|}
  
−
==Multi-Processing==
+
=== Software and Reference Data===
−
* [[OpenMPI]]
+
{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #0021A5; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
−
* [[OpenMP]]
+
|-
−
* [[OFED]]
+
| scope="col" width="150" |
−
* [[IB HCA Firmware]]
+
* [[Applications|Installed Applications]]
 +
* [[UFRC_environment_module|HiPerGator ufrc Tools]]
 +
| scope="col" width="150" |
 +
* [[Modules|Environment Modules System]]
 +
 
 +
| scope="col" width="150" |
 +
* [[Reference Data]]
 +
* [[AI Reference Datasets]]
 +
|-
 +
|}
 +
 
 +
=== Transfer Data ===
 +
{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
 +
|-
 +
| scope="col" width="150" |
 +
* [[Transfer Data]]
 +
| scope="col" width="150" |
 +
* [[Globus]]
 +
| scope="col" width="150" |
 +
* [[Samba Access]]
 +
|-
 +
|}
 +
 
 +
=== Specific Research Areas ===
 +
{|  cellpadding=10 width="100%" style="background-color: #FFF; border-color: #0021A5; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
 +
|-
 +
| scope="col" width="150" |
 +
* [[Biology|Biocomputing]]
 +
| scope="col" width="150" |
 +
| scope="col" width="150" |
 +
* [[Nlp|Natural Language Processing]]
 +
|-
 +
|}

Revision as of 20:27, 7 December 2021


The latest HiPerGator News and Announcements

Welcome to the University of Florida Research Computing Help and Documentation site. The information here is focused on particular applications, services, and usage examples and complements more general policies and information found on our main web site. It is used for information that changes more frequently and might become quickly dated or incorrect on the web site. This site is edited by individual UFRC staff members. If you find inaccuracies, errors, or omissions on this site please let us know.

Book an In-Person or Zoom support appointment.

Getting Started

Interfaces and Access

Scheduler

Software and Reference Data

Transfer Data

Specific Research Areas

Retrieved from "https://help.rc.ufl.edu/mediawiki/index.php?title=UFRC_Help_and_Documentation&oldid=21962"