Difference between revisions of "UFRC Help and Documentation"

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Welcome to the University of Florida High Performance Computing Center Wiki
 
  
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{{Note|[[:News:Latest|The latest HiPerGator News and Announcements]]|news}}
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<!-- {{Note|Interactive Jobs in the GPU partition are limited to 6 hrs|news}} -->
* [[Getting Started]]
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Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Help and Documentation site. The information here is focused on particular applications, services, and usage examples and complements more general policies and information found on our [https://www.rc.ufl.edu main web site]. It is used for information that changes more frequently and might become quickly dated or incorrect on the web site. This site is edited by individual UFRC staff members. If you find inaccuracies, errors, or omissions on this site please [https://support.rc.ufl.edu let us know].</span>
* [[Getting Help]]
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* [[Policies]]
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<span>[https://outlook.office365.com/owa/calendar/UFITResearchComputingSupport@uflorida.onmicrosoft.com/bookings/ Book an In-Person or Zoom support appointment.]</span>
* [[Installed Software]]
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=== Getting Started ===
* [[Common Problems]]
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{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
* [[Frequently Asked Questions]]
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* [[Schedulers]]
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* [[Getting Started ]]
* [[Job Submission Queues]]
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* [[Quick Start Guide]]
* [[Getting_Started#Torque_Scheduler | Sample Submission Script]]
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* [[New user training]]
* [[Hardware]]
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* [[Shutdown | Shutdown Activities]]
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* [[Training|Training, Events and How-To Videos]]
* [[Cluster Monitoring]]
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* [[Development_and_Testing|Interactive Development and Testing]]
* [[Operating Environment]]
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* [[Storage|Practical Storage Use]]
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* [[Current Events]]
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* [[AI Help|AI Help]]
* [[Administrivia]]
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* <span class="plainlinks">[https://support.rc.ufl.edu/enter_bug.cgi Submit a Support Request]</span>
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* [[Support|All Support Options]]</span>
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|-
 
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==Recent News==
 
* Due to heavy spamming, we are now requiring that you send a request for an account on the wiki in order to edit the pages. You can send requests to support@hpc.ufl.edu.
 
* The UFHPC_SCRATCH Environment Variable has been instituted. Details are located on the [[Scratch]] space page.
 
==Multi-Processing==
 
* [[OpenMPI]]
 
* [[OpenMP]]
 
* [[OFED]]
 
* [[IB HCA Firmware]]
 
  
==Compilers==
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=== Interfaces and Access===
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{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #0021A5; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
! Language !! Compiler !! Version !! Path
 
 
|-
 
|-
| Fortran || [[Intel]] || 9.1.037 || /opt/intel/fce/9.1.037/bin
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| scope="col" width="150" |
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* [[Jupyter_Notebooks| Jupyter (Python, R)]]
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* [[Galaxy|Galaxy Genomics Framework]]
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* [[GPU_Access|GPU Access]]
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| scope="col" width="150" |
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* [[GUI Programs|Running GUI Apps]]
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* [[Open OnDemand|OnDemand (Matlab, RStudio,...)]]
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| scope="col" width="150" |
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* [[Authentication With MFA|Multi-Factor Authentication]]
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* [[SSH Multiplexing]]
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* [[Blocked Accounts]]
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|-
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|}
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=== Scheduler ===
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{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
 
|-
 
|-
| Fortran || [[Intel]] || 9.1.039 (32-bit) || /opt/intel/fc/9.1.039/bin
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| scope="col" width="150" |
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* [[SLURM_Commands|SLURM Commands]]
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* [[Account_and_QOS_limits_under_SLURM|Account and QOS Limits Under SLURM]]
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* [[Large-Memory_SMP_Servers|Big Memory Partition]]
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* [[Available Node Features]]
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| scope="col" width="150" |
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* [[Sample_SLURM_Scripts|SLURM Job Script Examples]]
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* [[SLURM_Job_Arrays|SLURM Job Arrays]]
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|}
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=== Software and Reference Data===
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{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #0021A5; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
 
|-
 
|-
| Fortran || [[GNU]] || 4.1.1-53 || /usr/bin/gfortran
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| scope="col" width="150" |
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* [[Applications|Installed Applications]]
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* [[UFRC_environment_module|HiPerGator ufrc Tools]]
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| scope="col" width="150" |
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* [[Modules|Environment Modules System]]
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| scope="col" width="150" |
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* [[Reference Data]]
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* [[AI Reference Datasets]]
 
|-
 
|-
| Fortran || [[GNU]] || 3.4.6-8 || /usr/bin/g77
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|}
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=== Transfer Data ===
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{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
 
|-
 
|-
| C || [[Intel]] || 9.1.044 || /opt/intel/cce/9.1.044/bin
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| scope="col" width="150" |
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* [[Transfer Data]]
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| scope="col" width="150" |
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* [[Globus]]
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| scope="col" width="150" |
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* [[Samba Access]]
 
|-
 
|-
| C || [[GNU]] || 3.4.6 || /usr/bin/gcc
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|}
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=== Specific Research Areas ===
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{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #0021A5; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
 
|-
 
|-
| C++ || [[Intel]] || 9.1.044 || /opt/intel/cce/9.1.044/bin
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| scope="col" width="150" |  
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* [[Biology|Biocomputing]]
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| scope="col" width="150" |
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| scope="col" width="150" |
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* [[Nlp|Natural Language Processing]]
 
|-
 
|-
| C++ || [[GNU]] || 3.4.6 || /usr/bin/g++
 
 
|}
 
|}

Revision as of 20:27, 7 December 2021


Welcome to the University of Florida Research Computing Help and Documentation site. The information here is focused on particular applications, services, and usage examples and complements more general policies and information found on our main web site. It is used for information that changes more frequently and might become quickly dated or incorrect on the web site. This site is edited by individual UFRC staff members. If you find inaccuracies, errors, or omissions on this site please let us know.

Book an In-Person or Zoom support appointment.

Getting Started

Interfaces and Access

Scheduler

Software and Reference Data

Transfer Data

Specific Research Areas