Difference between revisions of "UFRC Help and Documentation"

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[[Category:Docs]]
 
[[Category:Docs]]
 
__NOTOC__
 
__NOTOC__
{{Note|Interactive Jobs in the GPU partition are limited to 6 hrs|news}}
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{{Note|[[:News:Latest|The latest HiPerGator News and Announcements]]|news}}
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<!-- {{Note|Interactive Jobs in the GPU partition are limited to 6 hrs|news}} -->
 
Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Help and Documentation site. The information here is focused on particular applications, services, and usage examples and complements more general policies and information found on our [https://www.rc.ufl.edu main web site]. It is used for information that changes more frequently and might become quickly dated or incorrect on the web site. This site is edited by individual UFRC staff members. If you find inaccuracies, errors, or omissions on this site please [https://support.rc.ufl.edu let us know].</span>
 
Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Help and Documentation site. The information here is focused on particular applications, services, and usage examples and complements more general policies and information found on our [https://www.rc.ufl.edu main web site]. It is used for information that changes more frequently and might become quickly dated or incorrect on the web site. This site is edited by individual UFRC staff members. If you find inaccuracies, errors, or omissions on this site please [https://support.rc.ufl.edu let us know].</span>
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<span>[https://outlook.office365.com/owa/calendar/UFITResearchComputingSupport@uflorida.onmicrosoft.com/bookings/ Book an In-Person or Zoom support appointment.]</span>
 
=== Getting Started ===
 
=== Getting Started ===
 
{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"  
 
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* [[Storage|Practical Storage Use]]
 
* [[Storage|Practical Storage Use]]
 
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* [[AI Help|AI Help]]
 
* <span class="plainlinks">[https://support.rc.ufl.edu/enter_bug.cgi Submit a Support Request]</span>
 
* <span class="plainlinks">[https://support.rc.ufl.edu/enter_bug.cgi Submit a Support Request]</span>
* <span class="plainlinks">[https://www.rc.ufl.edu/services/teaching-support/ Teaching Support]</span>
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* [[Support|All Support Options]]</span>
 
|-
 
|-
 
|}
 
|}
  
 
=== Interfaces and Access===
 
=== Interfaces and Access===
 
 
{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #0021A5; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
 
{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #0021A5; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
 
|-
 
|-
 
| scope="col" width="150" |
 
| scope="col" width="150" |
* [[Jupyter_Notebooks| Jupyter Notebooks]]
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* [[Jupyter_Notebooks| Jupyter (Python, R)]]
* [[Open OnDemand]]
 
 
* [[Galaxy|Galaxy Genomics Framework]]
 
* [[Galaxy|Galaxy Genomics Framework]]
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* [[GPU_Access|GPU Access]]
 
| scope="col" width="150" |
 
| scope="col" width="150" |
* [[GUI Programs]]
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* [[GUI Programs|Running GUI Apps]]
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* [[Open OnDemand|OnDemand (Matlab, RStudio,...)]]
 
| scope="col" width="150" |
 
| scope="col" width="150" |
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* [[Authentication With MFA|Multi-Factor Authentication]]
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* [[SSH Multiplexing]]
 
* [[Blocked Accounts]]
 
* [[Blocked Accounts]]
 
|-
 
|-
 
|}
 
|}
  
=== Batch System ===
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=== Scheduler ===
 
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|-
 
|-
 
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| scope="col" width="150" |
 
* [[SLURM_Commands|SLURM Commands]]
 
* [[SLURM_Commands|SLURM Commands]]
* [[Using_Variables_in_SLURM_Jobs|Using Variables in SLURM]]
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* [[Account_and_QOS_limits_under_SLURM|Account and QOS Limits Under SLURM]]
* [[SLURM_Job_Arrays|SLURM Job Arrays]]
 
 
| scope="col" width="150" |
 
| scope="col" width="150" |
* [[Account_and_QOS_limits_under_SLURM|Account and QOS Limits Under SLURM]]
 
 
* [[Large-Memory_SMP_Servers|Big Memory Partition]]
 
* [[Large-Memory_SMP_Servers|Big Memory Partition]]
 
* [[Available Node Features]]
 
* [[Available Node Features]]
 
| scope="col" width="150" |
 
| scope="col" width="150" |
* [[Annotated_SLURM_Script|Annotated Job Script Walk-through]]
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* [[Sample_SLURM_Scripts|SLURM Job Script Examples]]
* [[Sample_SLURM_Scripts|Sample SLURM Scripts]]
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* [[SLURM_Job_Arrays|SLURM Job Arrays]]
 
|}
 
|}
  
 
=== Software and Reference Data===
 
=== Software and Reference Data===
 
 
{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #0021A5; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
 
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|-
 
|-
 
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| scope="col" width="150" |
 
* [[Applications|Installed Applications]]
 
* [[Applications|Installed Applications]]
* [[Reference Data]]
 
 
* [[UFRC_environment_module|HiPerGator ufrc Tools]]
 
* [[UFRC_environment_module|HiPerGator ufrc Tools]]
 
| scope="col" width="150" |
 
| scope="col" width="150" |
 
* [[Modules|Environment Modules System]]
 
* [[Modules|Environment Modules System]]
* [[Software Development]]
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* [[AI Support]]
 
 
| scope="col" width="150" |
 
| scope="col" width="150" |
* [[GPU_Access|GPU Access]]
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* [[Reference Data]]
* [[Compilers|Available Compilers]]
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* [[AI Reference Datasets]]
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|-
 
|}
 
|}
  
=== Data Transfer ===
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=== Transfer Data ===
 
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|-
 
|-
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|-
 
|-
 
| scope="col" width="150" |  
 
| scope="col" width="150" |  
* [[Biology|Biological Research Computing]]
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* [[Biology|Biocomputing]]
* [[:Category:Bioinformatics|Bioinformatics Software]]
 
 
| scope="col" width="150" |
 
| scope="col" width="150" |
* [[R|R (BioConductor)]]
 
* [[BLASTDB|Blast Databases]]
 
 
| scope="col" width="150" |
 
| scope="col" width="150" |
 
* [[Nlp|Natural Language Processing]]
 
* [[Nlp|Natural Language Processing]]
 
|-
 
|-
 
|}
 
|}

Revision as of 20:27, 7 December 2021


Welcome to the University of Florida Research Computing Help and Documentation site. The information here is focused on particular applications, services, and usage examples and complements more general policies and information found on our main web site. It is used for information that changes more frequently and might become quickly dated or incorrect on the web site. This site is edited by individual UFRC staff members. If you find inaccuracies, errors, or omissions on this site please let us know.

Book an In-Person or Zoom support appointment.

Getting Started

Interfaces and Access

Scheduler

Software and Reference Data

Transfer Data

Specific Research Areas