Difference between revisions of "UFRC Help and Documentation"

Revision as of 14:09, 27 August 2020

Welcome to the University of Florida Research Computing Help and Documentation site. The information here is focused on particular applications, services, and usage examples and complements more general policies and information found on our main web site. It is used for information that changes more frequently and might become quickly dated or incorrect on the web site. This site is edited by individual UFRC staff members. If you find inaccuracies, errors, or omissions on this site please let us know.

Getting Started

Software and Reference Data

Use the tools from UFRC environment module for convenience.

Batch System

Connecting and Data Transfer

Samba Access

Globus

Transfer Data

Specific Research Areas

Galaxy Genomics Framework

@@ Line 1: / Line 1: @@
+[[Category:Docs]]
 __NOTOC__
 Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Help and Documentation site. The information here is focused on particular applications, services, and usage examples and complements more general policies and information found on our [https://www.rc.ufl.edu main web site]. It is used for information that changes more frequently and might become quickly dated or incorrect on the web site. This site is edited by individual UFRC staff members. If you find inaccuracies, errors, or omissions on this site please [https://support.rc.ufl.edu let us know].</span>
-=[[HiPerGator2.0|HiPerGator 2.0 Information]]=
-<!--
-=== HiPerGator 2.0 Information ===
-{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #0021A5; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
-| scope="col" width="150" |
-*
-|}
--->
 === Getting Started ===
 {| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
@@ Line 17: / Line 8: @@
 * [[Getting Started ]]
 * [[Mailing Lists]]
-* [[Events_Calendar]]
+* [[New user training]]
-* [[Training]]
+* [[Training|Training, Events and How-To Videos]]
 | scope="col" width="150" |
-* [[SLURM_Commands|SLURM Commands]]
 * [[Non_Batch-System_Resources|Non-Batch System Resources]]
 * [[Development_and_Testing|Interactive Development and Testing]]
 * [[GUI Programs]]
+* [[Blocked Accounts]]
 | scope="col" width="150" |
-* [[Password | Change your Password]]
+* [[SSH Key Creation (Windows)]]
-* <span class="plainlinks">[https://support.rc.ufl.edu/enter_bug.cgi Open a Support Request]</span>
+* <span class="plainlinks">[https://support.rc.ufl.edu/enter_bug.cgi Submit a Support Request]</span>
+* <span class="plainlinks">[https://www.rc.ufl.edu/services/procedures/storage/types/ Storage Types and Procedures]</span>
+* [[Storage|Practical Storage Use]]
+* <span class="plainlinks">[https://www.rc.ufl.edu/services/support/teaching-support/ Teaching Support]</span>
 |-
 |}
-=== Software and Libraries ===
+=== Software and Reference Data===
+Use the tools from [[UFRC environment module]] for convenience.
 {| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #0021A5; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
 |-
 | scope="col" width="150" |
-* [[Installed Software]]
+* [[Applications|Installed Applications]]
+* [[Reference Data]]
+* [[UFRC_environment_module|HiPerGator Tools]]
 | scope="col" width="150" |
 * [[Modules|Environment Modules System]]
+* [[Software Development]]
 | scope="col" width="150" |
 * [[GPU_Access|GPU Access]]
+* [[Compilers|Available Compilers]]
 |}
@@ Line 47: / Line 45: @@
 | scope="col" width="150" |
 * [[SLURM_Commands|SLURM Commands]]
-* [[PBS2SLURM_Command_Reference|Moab (PBS) to SLURM command reference]]
+* [[Using_Variables_in_SLURM_Jobs|Using Variables in SLURM]]
-* [[Using_Variables_in_SLURM_Jobs|Using variables in SLURM]]
 * [[SLURM_Job_Arrays|SLURM Job Arrays]]
 | scope="col" width="150" |
-* [[Account and QOS limits under SLURM]]
+* [[Account_and_QOS_limits_under_SLURM|Account and QOS Limits Under SLURM]]
-* [[GUI_Partition|GUI Partition usage]]
+* [[Large-Memory_SMP_Servers|Big Memory Partition]]
-* [[Large-Memory_SMP_Servers|Big Memory Queue]]
+* [[Available Node Features]]
 | scope="col" width="150" |
-* [[Annotated_SLURM_Script|Annotated Job Script Example]]
+* [[Annotated_SLURM_Script|Annotated Job Script Walk-through]]
 * [[Sample_SLURM_Scripts|Sample SLURM Scripts]]
-* [[Example_SLURM-Parallel-Job-Scripts|SLURM parallel job example script]]
-* [[Example_SLURM-GPU-Job-Scripts|SLURM GPU job example script]]
 |}
@@ Line 66: / Line 61: @@
 | scope="col" width="150" |
 * [[Samba Access]]
-* [[Transfer Data]]
 | scope="col" width="150" |
 * [[Globus]]
 | scope="col" width="150" |
-* [[PuTTY|Using PuTTY for SSH]]
+* [[Transfer Data]]
-* [[GatorBox]]
 |-
 |}
@@ Line 78: / Line 71: @@
 {|  cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
 |-
-| width="150" | [[Biology|Biological Research Computing]]
 | scope="col" width="150" |
+* [[Biology|Biological Research Computing]]
+* [[:Category:Bioinformatics|Bioinformatics Software]]
 | scope="col" width="150" |
-|-
-| scope="col" width="150" |
-* [[Galaxy|Galaxy Genomics Framework]]
 * [[R|R (BioConductor)]]
-|
 * [[BLASTDB|Blast Databases]]
 | scope="col" width="150" |
-* [[:Category:Bioinformatics|Bioinformatics Software]]
+* [[Galaxy|Galaxy Genomics Framework]]
 |-
 |}