Difference between revisions of "UFRC Help and Documentation"

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[[Category:Docs]]
 
__NOTOC__
 
__NOTOC__
Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Help and Documentation site. The information here is focused on particular applications, services, and usage examples and complements more general policies and information found on our [https://www.rc.ufl.edu main web site]. It is used for information that changes more frequently and might become quickly dated or incorrect on the web site. If you find inaccuracies, errors, or omissions on this site please [https://support.rc.ufl.edu let us know].</span>
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Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Help and Documentation site. The information here is focused on particular applications, services, and usage examples and complements more general policies and information found on our [https://www.rc.ufl.edu main web site]. It is used for information that changes more frequently and might become quickly dated or incorrect on the web site. This site is edited by individual UFRC staff members. If you find inaccuracies, errors, or omissions on this site please [https://support.rc.ufl.edu let us know].</span>
 
 
=[[HiPerGator2.0|HiPerGator 2.0 Information]]=
 
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=== HiPerGator 2.0 Information ===
 
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=== Getting Started ===
 
=== Getting Started ===
 
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* [[Getting Started ]]
 
* [[Getting Started ]]
 
* [[Mailing Lists]]
 
* [[Mailing Lists]]
* [[Events_Calendar]]
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* [[Events_Calendar|Events Calendar]]
* [[Training]]
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* [[Training|Training and How-To Videos]]
 
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* [[SLURM_Commands|SLURM Commands]]
 
 
* [[Non_Batch-System_Resources|Non-Batch System Resources]]
 
* [[Non_Batch-System_Resources|Non-Batch System Resources]]
 
* [[Development_and_Testing|Interactive Development and Testing]]
 
* [[Development_and_Testing|Interactive Development and Testing]]
* [[GUI Partition|GUI Programs]]
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* [[GUI Programs]]
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* [[Blocked Accounts]]
 
| scope="col" width="150" |
 
| scope="col" width="150" |
* [[Password | Change your Password]]
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* [[SSH Key Creation (Windows)]]
* <span class="plainlinks">[https://support.rc.ufl.edu/enter_bug.cgi Open a Support Request]</span>
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* <span class="plainlinks">[https://support.rc.ufl.edu/enter_bug.cgi Submit a Support Request]</span>
 
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* <span class="plainlinks">[https://www.rc.ufl.edu/services/procedures/storage/types/ Storage Types]</span>
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* <span class="plainlinks">[https://www.rc.ufl.edu/services/support/teaching-support/ Teaching Support]</span>
 
|-
 
|-
 
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|-
 
|-
 
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| scope="col" width="150" |
* [[Installed Software]]
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* [[Applications|Installed Applications]]
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* [[Software Development]]
 
| scope="col" width="150" |
 
| scope="col" width="150" |
 
* [[Modules|Environment Modules System]]
 
* [[Modules|Environment Modules System]]
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* [[Compilers|Available Compilers]]
 
| scope="col" width="150" |
 
| scope="col" width="150" |
 
* [[GPU_Access|GPU Access]]
 
* [[GPU_Access|GPU Access]]
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* [[UFRC_environment_module|Collection of UFRC Utilities]]
 
|}
 
|}
  
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|-
 
|-
 
| scope="col" width="150" |
 
| scope="col" width="150" |
* [[:Category:SLURM|SLURM Category]]
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* [[SLURM_Commands|SLURM Commands]]
* [[Billed Usage]]
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* [[Using_Variables_in_SLURM_Jobs|Using Variables in SLURM]]
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* [[SLURM_Job_Arrays|SLURM Job Arrays]]
 
| scope="col" width="150" |
 
| scope="col" width="150" |
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* [[Account_and_QOS_limits_under_SLURM|Account and QOS Limits Under SLURM]]
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* [[Large-Memory_SMP_Servers|Big Memory Partition]]
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* [[Annotated_SLURM_Script|Annotated Job Script Walk-through]]
 
* [[Sample_SLURM_Scripts|Sample SLURM Scripts]]
 
* [[Sample_SLURM_Scripts|Sample SLURM Scripts]]
* [[Annotated_SLURM_Script|Annotated Job Script Example]]
 
| scope="col" width="150" |
 
* [[Large-Memory_SMP_Servers|Big Memory Queue]]
 
| scope="col" width="150" |
 
* [[PBS2SLURM_Command_Reference|Moab (PBS) to SLURM command reference]]
 
* [[NCU and QOS limits under SLURM]]
 
 
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|}
  
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* [[Samba Access]]
 
* [[Samba Access]]
* [[Transfer Data]]
 
 
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| scope="col" width="150" |
 
* [[Globus]]
 
* [[Globus]]
 
| scope="col" width="150" |
 
| scope="col" width="150" |
* [[PuTTY|Using PuTTY for SSH]]
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* [[Transfer Data]]
* [[GatorBox]]
 
 
|-
 
|-
 
|}
 
|}
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|-
 
|-
| width="150" | [[Biology|Biological Research Computing]]
 
 
| scope="col" width="150" |  
 
| scope="col" width="150" |  
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* [[Biology|Biological Research Computing]]
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* [[:Category:Bioinformatics|Bioinformatics Software]]
 
| scope="col" width="150" |
 
| scope="col" width="150" |
|-
 
| scope="col" width="150" |
 
* [[Galaxy|Galaxy Genomics Framework]]
 
 
* [[R|R (BioConductor)]]
 
* [[R|R (BioConductor)]]
|
 
 
* [[BLASTDB|Blast Databases]]
 
* [[BLASTDB|Blast Databases]]
 
| scope="col" width="150" |
 
| scope="col" width="150" |
* [[:Category:Bioinformatics|Bioinformatics Software]]
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* [[Galaxy|Galaxy Genomics Framework]]
 
|-
 
|-
 
|}
 
|}

Revision as of 17:02, 9 October 2019


Welcome to the University of Florida Research Computing Help and Documentation site. The information here is focused on particular applications, services, and usage examples and complements more general policies and information found on our main web site. It is used for information that changes more frequently and might become quickly dated or incorrect on the web site. This site is edited by individual UFRC staff members. If you find inaccuracies, errors, or omissions on this site please let us know.

Getting Started

Software and Libraries

Batch System

Connecting and Data Transfer

Specific Research Areas