Difference between revisions of "UFRC Help and Documentation"

Revision as of 17:02, 9 October 2019

Welcome to the University of Florida Research Computing Help and Documentation site. The information here is focused on particular applications, services, and usage examples and complements more general policies and information found on our main web site. It is used for information that changes more frequently and might become quickly dated or incorrect on the web site. This site is edited by individual UFRC staff members. If you find inaccuracies, errors, or omissions on this site please let us know.

Getting Started

Software and Libraries

Batch System

Connecting and Data Transfer

Samba Access

Globus

Transfer Data

Specific Research Areas

Galaxy Genomics Framework

@@ Line 1: / Line 1: @@
+[[Category:Docs]]
 __NOTOC__
-Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Wiki. The information here augments what is found on our [http://www.hpc.ufl.edu web site] with information we think is best provided in a less formal and official context.  It is used for information that changes rapidly and might become quickly dated or incorrect on the web site.  While there is good and helpful information here, you ''will'' find text that has not been proofed to the same standards that we try to maintain on our web site. We hope you find it helpful.</span>
+Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Help and Documentation site. The information here is focused on particular applications, services, and usage examples and complements more general policies and information found on our [https://www.rc.ufl.edu main web site]. It is used for information that changes more frequently and might become quickly dated or incorrect on the web site. This site is edited by individual UFRC staff members. If you find inaccuracies, errors, or omissions on this site please [https://support.rc.ufl.edu let us know].</span>
-=[[HiPerGator2.0|HiPerGator 2.0 Information]]=
-<!--
-=== HiPerGator 2.0 Information ===
-{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #0021A5; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
-| scope="col" width="150" |
-*
-|}
--->
 === Getting Started ===
 {| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
@@ Line 16: / Line 7: @@
 | scope="col" width="150" |
 * [[Getting Started ]]
-* [[SLURM_Commands|SLURM Commands]]
+* [[Mailing Lists]]
-*[[Non_Batch-System_Resources|Non-Batch System Resources]]
+* [[Events_Calendar|Events Calendar]]
-* [[Development_and_Testing|Development and Testing]]
+* [[Training|Training and How-To Videos]]
 | scope="col" width="150" |
-* [[Mailing Lists]]
+* [[Non_Batch-System_Resources|Non-Batch System Resources]]
-* [[Events_Calendar]]
+* [[Development_and_Testing|Interactive Development and Testing]]
-* [[Training]]
+* [[GUI Programs]]
+* [[Blocked Accounts]]
 | scope="col" width="150" |
-* [[Password | Change your Password]]
+* [[SSH Key Creation (Windows)]]
-* <span class="plainlinks">[https://support.rc.ufl.edu/enter_bug.cgi Open a Support Request]</span>
+* <span class="plainlinks">[https://support.rc.ufl.edu/enter_bug.cgi Submit a Support Request]</span>
-* [http://rc.ufl.edu/jobstatus/ View Job Status]
+* <span class="plainlinks">[https://www.rc.ufl.edu/services/procedures/storage/types/ Storage Types]</span>
+* <span class="plainlinks">[https://www.rc.ufl.edu/services/support/teaching-support/ Teaching Support]</span>
 |-
 |}
@@ Line 34: / Line 27: @@
 |-
 | scope="col" width="150" |
-* [[Installed Software]]
+* [[Applications|Installed Applications]]
+* [[Software Development]]
 | scope="col" width="150" |
 * [[Modules|Environment Modules System]]
+* [[Compilers|Available Compilers]]
 | scope="col" width="150" |
 * [[GPU_Access|GPU Access]]
+* [[UFRC_environment_module|Collection of UFRC Utilities]]
 |}
@@ Line 45: / Line 41: @@
 |-
 | scope="col" width="150" |
-* [[:Category:SLURM|SLURM Documentation]]
+* [[SLURM_Commands|SLURM Commands]]
-* [[Billed Usage]]
+* [[Using_Variables_in_SLURM_Jobs|Using Variables in SLURM]]
+* [[SLURM_Job_Arrays|SLURM Job Arrays]]
+| scope="col" width="150" |
+* [[Account_and_QOS_limits_under_SLURM|Account and QOS Limits Under SLURM]]
+* [[Large-Memory_SMP_Servers|Big Memory Partition]]
 | scope="col" width="150" |
+* [[Annotated_SLURM_Script|Annotated Job Script Walk-through]]
 * [[Sample_SLURM_Scripts|Sample SLURM Scripts]]
-* [[Annotated_SLURM_Script|Annotated Job Script Example]]
-| scope="col" width="150" |
-* [[Large-Memory_SMP_Servers|Big Memory Queue]]
-| scope="col" width="150" |
-* [[PBS2SLURM_Command_Reference|Moab (PBS) to SLURM command reference]]
 |}
@@ Line 61: / Line 57: @@
 | scope="col" width="150" |
 * [[Samba Access]]
-* [[Transfer Data]]
 | scope="col" width="150" |
 * [[Globus]]
-* [[GUI Partition|GUI Programs]]
 | scope="col" width="150" |
-* [[PuTTY|Using PuTTY for SSH]]
+* [[Transfer Data]]
-* [[GatorBox]]
 |-
 |}
@@ Line 74: / Line 67: @@
 {|  cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
 |-
-| width="150" | [[Biology|Biological Research Computing]]
 | scope="col" width="150" |
+* [[Biology|Biological Research Computing]]
+* [[:Category:Bioinformatics|Bioinformatics Software]]
 | scope="col" width="150" |
-|-
-| scope="col" width="150" |
-* [[Galaxy|Galaxy Genomics Framework]]
 * [[R|R (BioConductor)]]
-|
 * [[BLASTDB|Blast Databases]]
 | scope="col" width="150" |
-* [[:Category:Bioinformatics|Bioinformatics Software]]
+* [[Galaxy|Galaxy Genomics Framework]]
 |-
 |}