Tuxedo

Tuxedo is a combination of three different programs:

• Bowtie - Bowtie Website
• tophat - Tophat Website
• Cufflinks - Cufflinks Website

See the respective program page for usage information or run

module spider program

where program is bowtie, tophat or cufflinks.

Location

These programs are all installed in:

/apps/tuxedo/bowtie
/apps/tuxedo/tophat
/apps/tuxedo/cufflinks

Libraries

Samtools also needs to be installed on the system for tophat to work. They are currently installed here:

/apps/tuxedo/samtools-0.1.16