Difference between revisions of "Tuxedo"

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__NOTOC__
 
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[[Category:Software]][[Category:Bioinformatics]]
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[[Category:Software]][[Category:Biology]]
 
Tuxedo is a combination of three different programs:
 
Tuxedo is a combination of three different programs:
  
 
* [[Bowtie]] - [http://bowtie-bio.sourceforge.net/index.shtml Bowtie Website]
 
* [[Bowtie]] - [http://bowtie-bio.sourceforge.net/index.shtml Bowtie Website]
* tophat - [http://tophat.cbcb.umd.edu/ Tophat Website]
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* [[Bowtie2]] - [http://bowtie-bio.sourceforge.net/bowtie2/index.shtml Bowtie Website]
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* [[Tophat]] - [http://tophat.cbcb.umd.edu/ Tophat Website]
 
* [[Cufflinks]] - [http://cufflinks.cbcb.umd.edu/ Cufflinks Website]
 
* [[Cufflinks]] - [http://cufflinks.cbcb.umd.edu/ Cufflinks Website]
  
 
See the respective program page for usage information or run
 
See the respective program page for usage information or run
 
  module spider program
 
  module spider program
where ''program'' is bowtie, tophat or cufflinks.
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where ''program'' is bowtie, bowtie2, tophat, or cufflinks.
  
==Location==
+
See individual software wiki pages for more details.
 
 
These programs are all installed in:
 
 
 
/apps/tuxedo/bowtie
 
/apps/tuxedo/tophat
 
/apps/tuxedo/cufflinks
 
 
 
==Libraries==
 
 
 
Samtools also needs to be installed on the system for tophat to work. They are currently installed here:
 
 
 
/apps/tuxedo/samtools-0.1.16
 

Latest revision as of 20:53, 12 August 2022

Tuxedo is a combination of three different programs:

See the respective program page for usage information or run

module spider program

where program is bowtie, bowtie2, tophat, or cufflinks.

See individual software wiki pages for more details.