Trinity

Description

{{{name}}} website  
Trinity contains three applications - Inchworm, Chrysalis, and Butterfly. Template:App Location

Using application with environment modules system

To use trinity with the environment modules system at HPC the following commands are available:

Get module information for trinity:

$module spider trinity

Load the default application module:

$module load trinity

The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:

• HPC_TRINITY_DIR - directory where trinity is located.

How To Run

To run Trinity after you load the module use the "Trinity.pl" perl script, or run_Trinity.sh shell script, which is particularly useful if the optional ALLPATHS-LG software is enabled.

Installation

Trinity is meant to be installed "in-tree". To install, just download Trinity, open the archive, and type 'make'. Optional software ALLPATHS-LG - a WGS (Whole Genome Shotgun) assembler can be used with trinity if available and the ALLPATHSLG_BASEDIR environment variable is set. Currently, we do not provide ALLPATHS-LG at the UF HPC.