Difference between revisions of "Trinity"

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* r20110519
* r20110519
* r20110820 (default)
* r20110820 (default)
* r20120125
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{{#if: {{#var: mod}}|==Using application with environment modules system==
{{#if: {{#var: mod}}|==Using application with environment modules system==

Revision as of 01:11, 31 January 2012


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Trinity contains three applications - Inchworm, Chrysalis, and Butterfly. Template:App Location

Available versions

  • r20110519
  • r20110820 (default)
  • r20120125

Using application with environment modules system

To use trinity with the environment modules system at HPC the following commands are available:

Get module information for trinity:

$module spider trinity

Load the default application module:

$module load trinity

The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:

  • HPC_TRINITY_DIR - directory where trinity is located.

How To Run

To run Trinity after you load the module use the "Trinity.pl" perl script, or run_Trinity.sh shell script, which is particularly useful if the optional ALLPATHS-LG software is enabled.