Trim isoseq polya

Revision as of 16:05, 17 August 2021 by Johnbullard (talk | contribs) (Created page with "Category:Software Category:Biology Category:Genetics Category:Sequencing {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|trim_isoseq_polyA}} |{{#vardefine:u...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search


trim_isoseq_polyA website  

This is a program to trim the polyA tails of DNA sequences in a Fasta format, using HMM.

It is primarily developed to process the "isoseq_flnc.fasta" file of PacBio Iso-Seq classify output, with the HMM model been trained with that data. However, with an -G option, it will process any fasta file.

Environment Modules

Run module spider trim_isoseq_polyA to find out what environment modules are available for this application.

System Variables

  • HPC_TRIM_ISOSEQ_POLYA_DIR - installation directory
  • HPC_TRIM_ISOSEQ_POLYA_BIN - executable directory