Difference between revisions of "Trans-ABySS"

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==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
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If you publish research that uses {{#var:app}} you have to cite it as follows:
 
If you publish research that uses {{#var:app}} you have to cite it as follows:
  
[http://www.nature.com/nmeth/journal/v7/n11/full/nmeth.1517.html Robertson, G., et al. 2010. De novo assembly and analysis of RNA-seq data. Nature Methods 7, 909-912(2010)
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[http://www.nature.com/nmeth/journal/v7/n11/full/nmeth.1517.html Robertson, G., et al. 2010. De novo assembly and analysis of RNA-seq data. Nature Methods 7, 909-912(2010)]
  
 
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Latest revision as of 21:29, 6 December 2019

Description

transabyss website  

De novo assembly of RNAseq data using ABySS

Required Modules

Serial

  • transabyss

System Variables

  • HPC_TRANSABYSS_DIR - installation directory




Citation

If you publish research that uses transabyss you have to cite it as follows:

Robertson, G., et al. 2010. De novo assembly and analysis of RNA-seq data. Nature Methods 7, 909-912(2010)