Difference between revisions of "TraitRate"
Jump to navigation
Jump to search
(Created page with "Category:Software {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|traitrate}} |{{#vardefine:url|http://www.tau.ac.il/~itaymay/cp/traitRate/index.html}} <!--CONFIGURATIO...") |
|||
| Line 81: | Line 81: | ||
<!--Turn the Table of Contents and Edit paragraph links ON/OFF--> | <!--Turn the Table of Contents and Edit paragraph links ON/OFF--> | ||
__NOTOC____NOEDITSECTION__ | __NOTOC____NOEDITSECTION__ | ||
| + | =Validation= | ||
| + | * Validated 4/5/2018 | ||
Revision as of 20:15, 5 April 2018
Description
traitRate is a program for the detection of trait-dependent shifts in the rate of sequence evolution.
Sample input files are available at http://www.tau.ac.il/~itaymay/cp/traitRate/index.html and in the "$HPC_TRAITRATE_EXE" directory.
Required Modules
Serial
- traitrate
System Variables
- HPC_{{#uppercase:traitrate}}_DIR - installation directory
Citation
If you publish research that uses traitrate you have to cite it as follows:
Mayrose I and Otto SP. 2011. A Likelihood Method for Detecting Trait-Dependent Shifts in the Rate of Molecular Evolution. Mol Biol Evol. 28:781-791.
Validation
- Validated 4/5/2018