Difference between revisions of "Tracula"

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==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - Installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - Installation directory
* HPC_{{#uppercase:{{#var:app}}}}_BIN - Executable directory
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* HPC_{{uc:{{#var:app}}}}_BIN - Executable directory
 
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{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 21:29, 6 December 2019

Description

tracula website  

TRACULA (TRActs Constrained by UnderLying Anatomy) is a tool for automatic reconstruction of a set of major white-matter pathways from diffusion-weighted MR images. It uses global probabilistic tractography with anatomical priors. Prior distributions on the neighboring anatomical structures of each pathway are derived from an atlas and combined with the FreeSurfer cortical parcellation and subcortical segmentation of the subject that is being analyzed to constrain the tractography solutions. This obviates the need for user interaction, e.g., to draw ROIs manually or to set thresholds on path angle and length, and thus automates the application of tractography to large datasets.

Required Modules

Serial

  • tracula

System Variables

  • HPC_TRACULA_DIR - Installation directory
  • HPC_TRACULA_BIN - Executable directory





Validation

  • Validated 4/5/2018