Tophat
Revision as of 18:11, 10 August 2012 by Moskalenko (talk | contribs) (Text replace - "]] {| <!--Main settings - REQUIRED-->" to "]] {|<!--Main settings - REQUIRED-->")
|
|
Description
TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons.
Tophat is a part of the Tuxedo suite.
Available Versions
- 1.3.0.
- 1.3.3 beta.
- 1.4.1 (default).
Required Modules
Serial
- tophat
- HPC_TOPHAT_BIN - executable directory
- HPC_TOPHAT_DOC - documents directory