ToFU2
Revision as of 17:38, 24 October 2017 by Moskalenko (talk | contribs)
Description
This is the developmenal (ToFU2) branch of the PacBio IsoSeq analysis software. The isoform sequencing (Iso-Seq) application generates full-length cDNA sequences — from the 5’ end of transcripts to the poly-A tail — eliminating the need for transcriptome reconstruction using isoform-inference algorithms. The Iso-Seq method generates accurate information about alternatively spliced exons and transcriptional start sites. It also delivers information about poly-adenylation sites for transcripts up to 10 kb in length across the full complement of isoforms within targeted genes or the entire transcriptome.
Required Modules
System Variables
- HPC_{{#uppercase:tofu2}}_DIR - installation directory
Additional Information
To launch the singularity container ToFU2 is installed in use the 'launch_tofu2' command in a dev session shell or in a job script. E.g.
$ ml tofu2 $ launch_tofu2 run_IceInit2.py