Tgicl

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Description

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TGI Clustering tools (TGICL): a software system for fast clustering of large EST datasets

This package automates clustering and assembly of a large EST/mRNA dataset. The clustering is performed by a slightly modified version of NCBI's megablast , and the resulting clusters are then assembled using CAP3 assembly program. TGICL starts with a large multi-FASTA file (and an optional peer quality values file) and outputs the assembly files as produced by CAP3

Template:App Location

Available versions

  • 2.1

Running the application using modules

To use tgicl with the environment modules system at HPC the following commands are available:

Get module information for tgicl:

$module spider tgicl

Load the default application module:

$module load tgicl

The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:

  • HPC_TGICL_DIR - directory where tgicl is located.
  • HPC_TGICL_DIR - installation directory
  • HPC_TGICL_BIN - executable directory
  • HPC_TGICL_LIB - lib directory
  • HPC_TGICL_CONF - conf directory