TaxMaps
Revision as of 21:29, 6 December 2019 by Moskalenko (talk | contribs) (Text replacement - "#uppercase" to "uc")
Description
taxMaps is an ultra-efficient, customizable and fully scalable taxonomic classification tool for short-read data designed to deal with large DNA/RNA metagenomics samples. Its performance and comprehensiveness makes it highly suitable for unbiased contamination detection in large-scale sequencing operations, microbiome studies comprising a large number of samples, and for applications where the analysis delivery time is a critical factor, such as pathogen identification from clinical or environmental samples.
Environment Modules
Run module spider taxmaps to find out what environment modules are available for this application.
System Variables
- HPC_TAXMAPS_DIR - installation directory
- HPC_TAXMAPS_BIN - executable directory
- HPC_TAXMAPS_DOC - documentation directory
- TAXMAPS_DB - database directory