Difference between revisions of "TRANSIT"

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(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|transit}} |{{#vardefine:url|https://github.com/mad-lab/transit}} <!--CONFIGU...")
 
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
+
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory
+
* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
  
 
<!--Configuration-->
 
<!--Configuration-->

Latest revision as of 21:29, 6 December 2019

Description

transit website  

TRANSIT is a tool for processing and statistical analysis of Tn-Seq data. It provides an easy to use graphical interface and access to three different analysis methods that allow the user to determine essentiality in a single condition as well as between conditions.

Environment Modules

Run module spider transit to find out what environment modules are available for this application.

System Variables

  • HPC_TRANSIT_DIR - installation directory
  • HPC_TRANSIT_BIN - executable directory