Difference between revisions of "TGSGapCloser"
Jump to navigation
Jump to search
(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|tgsgapcloser}} |{{#vardefine:url|https://github.com/BGI-Qingdao/TGS-GapClose...") |
|||
| Line 10: | Line 10: | ||
|{{#vardefine:testing|}} <!--PROFILING--> | |{{#vardefine:testing|}} <!--PROFILING--> | ||
|{{#vardefine:faq|}} <!--FAQ--> | |{{#vardefine:faq|}} <!--FAQ--> | ||
| − | |{{#vardefine:citation|}} <!--CITATION--> | + | |{{#vardefine:citation|1}} <!--CITATION--> |
|{{#vardefine:installation|}} <!--INSTALLATION--> | |{{#vardefine:installation|}} <!--INSTALLATION--> | ||
|} | |} | ||
| Line 59: | Line 59: | ||
If you publish research that uses {{#var:app}} you have to cite it as follows: | If you publish research that uses {{#var:app}} you have to cite it as follows: | ||
| − | + | [https://academic.oup.com/gigascience/article/9/9/giaa094/5902284 If you use TGS-GapCloser in your work, please cite: TGS-GapCloser: A fast and accurate gap closer for large genomes with low coverage of error-prone long reads Mengyang Xu, Lidong Guo, Shengqiang Gu, Ou Wang, Rui Zhang, Brock A Peters, Guangyi Fan, Xin Liu, Xun Xu, Li Deng, Yongwei Zhang GigaScience, Volume 9, Issue 9, 1 September 2020, giaa094] | |
|}} | |}} | ||
Latest revision as of 15:35, 20 April 2021
Description
A gap-closing software tool that uses error-prone long reads generated by third-generation-sequence techniques (Pacbio, Oxford Nanopore, etc.) or preassembled contigs to fill N-gap in the genome assembly.
Environment Modules
Run module spider tgsgapcloser to find out what environment modules are available for this application.
System Variables
- HPC_TGSGAPCLOSER_DIR - installation directory
- HPC_TGSGAPCLOSER_BIN - executable directory
Citation
If you publish research that uses tgsgapcloser you have to cite it as follows: