Difference between revisions of "TESS"

From UFRC
Jump to navigation Jump to search
 
(3 intermediate revisions by 2 users not shown)
Line 1: Line 1:
[[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]]
+
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Math]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|tess}}
 
|{{#vardefine:app|tess}}
Line 20: Line 20:
 
TESS implements a Bayesian clustering algorithm for spatial population genetic analyses. It can perform both individual geographical assignment and admixture analysis. It is designed for seeking genetic discontinuities in continuous populations and estimating spatially varying individual admixture proportions. TESS returns graphical displays of geographical cluster assignments or admixture proportions (depending on the model used) and textual output of the admixture Q matrix.
 
TESS implements a Bayesian clustering algorithm for spatial population genetic analyses. It can perform both individual geographical assignment and admixture analysis. It is designed for seeking genetic discontinuities in continuous populations and estimating spatially varying individual admixture proportions. TESS returns graphical displays of geographical cluster assignments or admixture proportions (depending on the model used) and textual output of the admixture Q matrix.
 
<!--Modules-->
 
<!--Modules-->
==Required Modules==
+
==Environment Modules==
===Serial===
+
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR
+
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==
Line 67: Line 57:
 
<!--Turn the Table of Contents and Edit paragraph links ON/OFF-->
 
<!--Turn the Table of Contents and Edit paragraph links ON/OFF-->
 
__NOTOC____NOEDITSECTION__
 
__NOTOC____NOEDITSECTION__
=Validation=
 
* Validated 4/5/2018
 

Latest revision as of 16:26, 22 August 2022

Description

tess website  

TESS implements a Bayesian clustering algorithm for spatial population genetic analyses. It can perform both individual geographical assignment and admixture analysis. It is designed for seeking genetic discontinuities in continuous populations and estimating spatially varying individual admixture proportions. TESS returns graphical displays of geographical cluster assignments or admixture proportions (depending on the model used) and textual output of the admixture Q matrix.

Environment Modules

Run module spider tess to find out what environment modules are available for this application.

System Variables

  • HPC_TESS_DIR - installation directory