Syzygy

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Description

syzygy website  

Syzygy is a targeted sequencing post processing analysis tool with short read data that allows:

  • Rare variant SNP detection
  • Allele frequency estimation
  • Single-marker association testing
  • Group-wise marker test association
  • Pooled experiment statistical summary (% dbSNP , TS/Tv, NS/S)
  • VCF output
  • Power to detect variant evaluation
  • Annotation of rare variants discovered in the pooled sequencing experiment from primary sequencing data in BAM/SAM format.

Required Modules

Serial

  • syzygy

System Variables

  • HPC_SYZYGY_DIR





Validation

  • Validated 4/5/2018