Difference between revisions of "Structure"
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Moskalenko (talk | contribs) m (Text replace - "==Available versions== (.*)+ <!-- -->" to "<!--Modules-->") |
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{{#if: {{#var: pbs}}|==PBS Script Examples== | {{#if: {{#var: pbs}}|==PBS Script Examples== | ||
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WRITE USAGE POLICY HERE (perhaps templates for a couple of main licensing schemes can be used)|}} | WRITE USAGE POLICY HERE (perhaps templates for a couple of main licensing schemes can be used)|}} | ||
{{#if: {{#var: testing}}|==Performance== | {{#if: {{#var: testing}}|==Performance== | ||
Revision as of 16:33, 10 August 2012
Description
Structure implements a model-based clustering method for inferring population structure using genotype data consisting of unlinked markers
You will have to provide the mainparams and extraparams files in a working directory from which you run the software. Sample files are located in $HPC_STRUCTURE_CONF directory.
Execution Environment and Modules
To use structure with the environment modules system at HPC the following commands are available:
Get module information for structure:
$module spider structure
Load the default application module:
$module load structure
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_STRUCTURE_DIR - directory where structure is located.
- HPC_STRUCTURE_BIN - executable directory
- HPC_STRUCTURE_DOC - documentation directory
- HPC_STRUCTURE_CONF - directory with sample configuration files