Difference between revisions of "Structure"

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Structure implements a model-based clustering method for
 
Structure implements a model-based clustering method for
 
inferring population structure using genotype data consisting of unlinked
 
inferring population structure using genotype data consisting of unlinked

Revision as of 01:54, 10 August 2012

Description

structure website  

Structure implements a model-based clustering method for inferring population structure using genotype data consisting of unlinked markers

You will have to provide the mainparams and extraparams files in a working directory from which you run the software. Sample files are located in $HPC_STRUCTURE_CONF directory. Template:App Location

Available versions

  • 2.3.3

Running the application using modules

To use structure with the environment modules system at HPC the following commands are available:

Get module information for structure:

$module spider structure

Load the default application module:

$module load structure

The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:

  • HPC_STRUCTURE_DIR - directory where structure is located.
  • HPC_STRUCTURE_BIN - executable directory
  • HPC_STRUCTURE_DOC - documentation directory
  • HPC_STRUCTURE_CONF - directory with sample configuration files