Difference between revisions of "Structure"
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Sample files are located in the''$HPC_STRUCTURE_CONF'' directory. | Sample files are located in the''$HPC_STRUCTURE_CONF'' directory. | ||
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
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Latest revision as of 16:03, 22 August 2022
Description
Structure implements a model-based clustering method for inferring population structure using genotype data consisting of unlinked markers
You will have to provide the mainparams and extraparams files in a working directory from which you run the software or via the arguments:
- -m /path/to/mainparams
- -e /path/to/extraparams
- -s /path/to/STRATparams
Sample files are located in the$HPC_STRUCTURE_CONF directory.
Environment Modules
Run module spider structure to find out what environment modules are available for this application.
System Variables
- HPC_STRUCTURE_DIR - installation directory
- HPC_STRUCTURE_BIN - executable directory
- HPC_STRUCTURE_DOC - documentation directory
- HPC_STRUCTURE_CONF - directory with sample configuration files