Difference between revisions of "Structure"
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You will have to provide the mainparams and extraparams files in a working | You will have to provide the mainparams and extraparams files in a working | ||
| − | directory from which you run the software | + | directory from which you run the software or via the arguments: |
| − | ''$HPC_STRUCTURE_CONF'' directory. | + | * -m path/to/mainparams |
| + | * -e path/to/extraparams | ||
| + | * -s path/to/STRATparams | ||
| + | |||
| + | Sample files are located in the''$HPC_STRUCTURE_CONF'' directory. | ||
<!--Modules--> | <!--Modules--> | ||
==Required Modules== | ==Required Modules== | ||
Revision as of 20:30, 16 August 2013
Description
Structure implements a model-based clustering method for inferring population structure using genotype data consisting of unlinked markers
You will have to provide the mainparams and extraparams files in a working directory from which you run the software or via the arguments:
- -m path/to/mainparams
- -e path/to/extraparams
- -s path/to/STRATparams
Sample files are located in the$HPC_STRUCTURE_CONF directory.
Required Modules
Serial
- structure
System Variables
- HPC_{{#uppercase:structure}}_DIR - installation directory
- HPC_STRUCTURE_BIN - executable directory
- HPC_STRUCTURE_DOC - documentation directory
- HPC_STRUCTURE_CONF - directory with sample configuration files