Difference between revisions of "Squigglekit"

From UFRC
Jump to navigation Jump to search
Line 1: Line 1:
[[Category:Software]][[Category:Data Visualization]][[Category:Biology]]
+
[[Category:Software]][[Category:Data Visualization]][[Category:Biology]][[Category:Data Analysis]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|squigglekit}}
 
|{{#vardefine:app|squigglekit}}

Revision as of 14:38, 27 May 2022

Description

squigglekit website  

A toolkit for manipulating nanopore signal data

Environment Modules

Run module spider squigglekit to find out what environment modules are available for this application.

System Variables

  • HPC_SQUIGGLEKIT_DIR - installation directory
  • HPC_SQUIGGLEKIT_BIN - executable directory

Additional Information

$ module load squigglekit/1.0.0

$ fast5_fetcher.py

$ SquigglePlot.py

$ SquigglePull.py