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  • * [http://lists.ufl.edu/cgi-bin/wa?A0=HPC-ANNOUNCE-L HPC announcement list]. All Research Computing users are automatically subscrib * [http://lists.ufl.edu/cgi-bin/wa?A0=HPC-BIO-L HPC Biocomputing discussion list] - This is an open subscription list for UF Bi
    778 bytes (110 words) - 20:34, 2 August 2021
  • HPC infrastructure related documentation.
    8 members (2 subcategories, 0 files) - 20:57, 2 August 2021
  • Software for Biological Computing provided by the UF HPC Center. You can browse through the sub-categories or software package names
    452 members (17 subcategories, 0 files) - 18:49, 2 August 2021
  • ...itz@ufl.edu Biological Computing Training] specialist. This section of the HPC wiki is dedicated to all things related to biological research computing at ...laxy|documentation]] or proceed directly to the [http://galaxy.rc.ufl.edu/ HPC Galaxy interface].
    4 KB (667 words) - 19:19, 11 February 2021
  • <!--HPC pre-built Bowtie Indexes are located in ''/scratch/hpc/bio/bowtie''. They should be available for bowtie use automatically. If you
    3 KB (354 words) - 21:29, 6 December 2019
  • ====Using HPC GO database from a graphical Blast2GO application==== To use the HPC GO database with a graphical Blast2GO interface running locally on your com
    6 KB (915 words) - 21:03, 6 December 2019
  • ...neers interested in porting their codes to a wide-variety of heterogeneous HPC hardware platforms and architectures with significantly less programming ef
    3 KB (294 words) - 21:23, 6 December 2019
  • Intel processor optimized versions of cap3 and formcon are installed at HPC.
    2 KB (293 words) - 21:02, 6 December 2019
  • ...in an object oriented manner. pyrpipe can be used on local computers or on HPC environments to manage analysis of RNA-Seq data. Users can use the easy-to-
    3 KB (311 words) - 15:22, 16 March 2020
  • ...computing the test statistic, please cite Alexandros Stamatakis. RAxML-VI-HPC: Maximum Likelihood-based Phylogenetic Analyses with Thousands of Taxa and
    3 KB (320 words) - 21:29, 6 December 2019
  • ...following Ribosomal RNA databases are available for use with RiboPicker at HPC:
    3 KB (369 words) - 21:24, 6 December 2019
  • ..._campaign=HPC_Update_31_Lmod_Alternative_to_Environment_Modules_2013-01-30 HPC Admin Magazine].
    3 KB (424 words) - 02:10, 2 October 2021
  • ...veraged tree topologies. jModelTest 2 includes High Performance Computing (HPC) capabilities and additional features like new strategies for tree optimiza
    3 KB (424 words) - 21:22, 6 December 2019
  • ...within the software you used for transferring the files or by logging into HPC and running the following commands:
    4 KB (641 words) - 21:22, 4 August 2020
  • ....rc.ufl.edu/1.24/stacks http://stacks.rc.ufl.edu/1.24/stacks] and use your HPC credentials to log in and view the results. The exact URI is constructed as
    4 KB (638 words) - 18:51, 9 June 2021
  • ...Galaxy are access to the high-speed campus Research Network, use of large HPC cluster resources for running jobs, transparent user account access and con
    4 KB (605 words) - 20:59, 2 August 2021
  • All modules are automatically unloaded when you log out of the HPC system, and in most cases, there is no need to use the unload command.
    5 KB (733 words) - 18:38, 11 August 2020
  • ...$MYSQL_DB" must be changed to the database name used for the run. Use your HPC credentials to access the protected web portal.
    4 KB (685 words) - 18:52, 9 June 2021
  • ...s, and Arm Reports for characterizing and understanding the performance of HPC applications. * https://developer.arm.com/tools-and-software/server-and-hpc/downloads/arm-forge
    5 KB (683 words) - 14:30, 29 September 2021
  • ...same usage pattern you learned on Windows. However, when you log into the HPC system to get the job done via the command-line (CLI) interface you have to
    6 KB (1,062 words) - 20:42, 2 August 2021

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