Search results

Deepfri
[[Category:Software]][[Category:Machine Learning]][[Category:Biology]]

2 KB (290 words) - 19:30, 10 March 2023
SEPP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (313 words) - 20:39, 12 August 2022
Primus
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (266 words) - 21:22, 6 December 2019
TPP
[[Category:Software]][[Category:Biology]][[Category:Chemistry]][[Category:spectroscopy]]

2 KB (266 words) - 20:22, 24 August 2022
Gaussian galaxy-input
[[Category:Galaxy]][[Category:Software]]

261 bytes (40 words) - 14:24, 30 June 2017
Cx oracle
[[Category:Software]][[Category:Database]][[Category:Utility]]

2 KB (269 words) - 14:22, 15 August 2022
Iaps
[[Category:Software]]

2 KB (250 words) - 18:42, 8 February 2023
PRINSEQ++
[[Category:Software]][[Category:phylogenetics]]

2 KB (298 words) - 18:11, 15 April 2020
MeShClust
[[Category:Software]][[Category:Biology]]

2 KB (244 words) - 20:44, 27 January 2021
Face recognition
[[Category:Software]][[Category:Phylogenetics]]

2 KB (297 words) - 14:56, 3 June 2022
PCIT
[[Category:Software]][[Category:Biology]]

3 KB (302 words) - 20:19, 12 August 2022
AdapterRemoval
[[Category:Software]][[Category:Phylogenetics]]

3 KB (357 words) - 20:47, 11 August 2022
CONCOCT
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...change significantly from one version to another. If you want to use this software, please stay up to date with the list of known issues: [https://github.com/

3 KB (308 words) - 18:39, 12 August 2022
GMcloser
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (321 words) - 17:25, 10 June 2022
BSseeker2
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (238 words) - 14:40, 10 June 2022
Mdanalysis
[[Category:Software]][[Category:Biology]][[Category:Physics]]

3 KB (387 words) - 19:49, 12 August 2022
FrameDP
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (249 words) - 15:07, 10 June 2022
NECAT
[[Category:Software]][[Category:Phylogenetics]]

2 KB (250 words) - 13:32, 23 June 2020
Face morpher
[[Category:Software]][[Category:Phylogenetics]]

2 KB (264 words) - 15:18, 15 August 2022
OTB
[[Category:Software]][[Category:Geospatial]]

3 KB (311 words) - 17:27, 10 June 2022
Ncbi-vdb
[[Category:Software]][[Category:NGS]]

3 KB (428 words) - 14:33, 19 August 2022
OrganellePBA
[[Category:Software]][[Category:Phylogenetics]]

2 KB (258 words) - 21:22, 6 December 2019
Seqtk
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (263 words) - 20:40, 12 August 2022
LongStitch
[[Category:Software]] [[Category:Genomics]] [[Category:Biology]]

3 KB (314 words) - 19:00, 10 October 2022
Category:Utility
[[Category:Software]]

33 members (0 subcategories, 0 files) - 21:45, 24 October 2022
EvoLSTM
[[Category:Software]][[Category:Biology]]

3 KB (309 words) - 18:52, 12 August 2022
Tiff
[[Category:Software]][[Category:Imaging]] This software provides support for the Tag Image File Format (TIFF), a widely used format

2 KB (246 words) - 19:19, 1 June 2022
CasOFFinder
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 21:58, 26 August 2020
HMMRATAC
[[Category:Software]][[Category:Phylogenetics]]

2 KB (268 words) - 14:22, 7 May 2021
SU2
[[Category:Software]][[Category:Phylogenetics]] ...tiphysics analysis and design optimization freely available as open-source software and involving everyone in its creation and development.

2 KB (278 words) - 18:50, 1 June 2022
Lua
[[Category:Software]][[Category:Language]][[Category:Programming]]

3 KB (323 words) - 20:21, 15 August 2022
RaGOO
[[Category:Software]][[Category:Phylogenetics]]

2 KB (280 words) - 21:24, 6 December 2019
Minimap
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (385 words) - 19:07, 10 June 2022
Baypass
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://www1.montpellier.inra.fr/CBGP/software/baypass/}}

3 KB (355 words) - 21:05, 6 December 2019
Pbpigeon
[[Category:Software]][Category:Biology]]

2 KB (275 words) - 22:37, 21 January 2024
Category:Statistics
[[Category:Math]][[Category:Software]] Statistical software

16 members (0 subcategories, 0 files) - 15:29, 23 August 2022
Applications FAQ
...n package from a binary archive (wheel) that was built on a system against software libraries that are not compatible with HiPerGator. A typical error message > devtools::install_github("author/software")

4 KB (579 words) - 20:42, 16 October 2023
Freecad
[[Category:Software]][[Category:Modeling]]

2 KB (241 words) - 00:16, 15 February 2023
MotionCor2
[[Category:Software]][[Category:imaging]] |{{#vardefine:url|http://msg.ucsf.edu/em/software/index.html}}

3 KB (375 words) - 20:33, 24 August 2022
Meta-Tissue
[[Category:Software]][[Category:Biology]][[Category:Genomics]] Meta-Tissue is a free software for identifying eQTLs from multiple tissues. It uses meta-analysis to combi

3 KB (328 words) - 19:24, 18 August 2022
Csubst
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (380 words) - 22:12, 26 July 2023
PROJ
[[Category:Software]][[Category: Library]][[Category: Geospatial]]

2 KB (240 words) - 20:26, 24 August 2022
Giotto
[[Category:Software]][[Category:Phylogenetics]]

3 KB (303 words) - 19:31, 26 May 2022
Biolite
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Variant Calling]]

3 KB (362 words) - 12:54, 15 August 2022
BEDTools
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

3 KB (485 words) - 12:48, 15 August 2022
JCVI
[[Category:Software]][[Category:Phylogenetics]]

2 KB (265 words) - 14:30, 4 September 2020
GLMsingle
[[Category:Software]][[Category:imaging]]

2 KB (291 words) - 20:33, 24 August 2022
BamUtil
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (328 words) - 18:02, 12 August 2022
Vcontact
[[Category:Software]][[Category:Phylogenetics]]

3 KB (358 words) - 20:04, 27 May 2022
IVA
[[Category:Software]][[Category:Phylogenetics]]

2 KB (300 words) - 16:06, 7 December 2021
Tensorboard
...separate workload within a HiPerGator Desktop session. Many neural network software frameworks are able to stream training data to a TensorBoard log file.

2 KB (231 words) - 21:03, 12 December 2023
Rcorrector
[[Category:Software]][[Category:Phylogenetics]]

2 KB (282 words) - 13:58, 6 June 2022
Tandem-Genotypes
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 19:01, 1 June 2022
GenSel
[[Category:Software]][[Category:Genomics]]

2 KB (271 words) - 17:03, 15 August 2022
Sdsl
[[Category:Software]][[Category:library]][[Category:compiler]]

3 KB (350 words) - 17:47, 15 August 2022
DNA Clust
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (252 words) - 18:50, 12 August 2022
PALES
[[Category:Software]][[Category:Physics]] |{{#vardefine:url|http://spin.niddk.nih.gov/bax/software/PALES/index.html}}

3 KB (355 words) - 18:06, 19 August 2022
NanoSV
[[Category:Software]][[Category:Biology]][[Category:Genomics]] NanoSV is a software package that can be used to identify structural genomic variations in long-

2 KB (282 words) - 14:23, 19 August 2022
SHAPEIT4
[[Category:Software]]

5 KB (617 words) - 19:22, 14 December 2022
CMWP
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (329 words) - 17:57, 10 June 2022
MiRBShunter
[[Category:Software]][[Category:Phylogenetics]]

2 KB (252 words) - 21:21, 6 December 2019
PacMAP
[[Category:Software]][[Category:Genomics]]

3 KB (304 words) - 18:24, 11 February 2023
Bridger
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

3 KB (341 words) - 13:14, 15 August 2022
Captus
[[Category:Software]]

3 KB (321 words) - 16:36, 16 November 2022
Galaxy Upgrade Highlights
[[Category:Software]][[Category:Galaxy]]

3 KB (417 words) - 20:34, 18 April 2018
NAMD
[[Category:Software]][[Category:Molecular Dynamics]]

2 KB (245 words) - 13:45, 19 August 2022
PolyGembler
[[Category:Software]][[Category:Phylogenetics]]

3 KB (344 words) - 13:45, 3 November 2020
Metabolic
[[Category:Software]] This software enables the prediction of metabolic and biogeochemical functional trait pro

3 KB (304 words) - 19:26, 18 August 2022
MinkowskiEngine
[[Category:Software]][[Category:Machine Learning]]

2 KB (256 words) - 17:52, 31 May 2022
Ngscheckmate
[[Category:Software]][[Category:Phylogenetics]] NGSCheckMate is a software package for identifying next generation sequencing (NGS) data files from th

3 KB (390 words) - 18:12, 27 May 2022
Deprecation
[[Category:Software]] ...databases that are going to be deprecated. The modules are removed and the software is put into the REMOVE directories to be removed 6 months after being added

9 KB (946 words) - 22:32, 15 December 2022
Mach2VCF
[[Category:Software]][[Category:Biology]]

2 KB (242 words) - 14:49, 10 June 2022
Fdupes
[[Category:Software]][[Category:File Management]]

2 KB (241 words) - 13:53, 21 October 2022
FastTree
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

3 KB (388 words) - 16:39, 15 August 2022
MetaVelvet
[[Category:Software]][[Category:genomics]][[Category:Biology]]

3 KB (326 words) - 19:28, 18 August 2022
Alienhunter
[[Category:Software]][[Category:Sequencing]][[Category:Biology]]

2 KB (256 words) - 12:34, 12 August 2022
SNPGenie
[[Category:Software]][[Category:Phylogenetics]]

3 KB (423 words) - 18:41, 1 June 2022
LSD2
[[Category:Software]][[Category:Phylogenetics]] If you use this software, please cite: “Fast dating using least-squares criteria and algorithms”

2 KB (269 words) - 20:45, 30 April 2020
Svim-asm
[[Category:Software]][[Category:Biology]]

3 KB (306 words) - 17:16, 31 May 2022
Category:Data Mining
[[Category:Data]][[Category:Software]]

7 members (0 subcategories, 0 files) - 15:25, 23 August 2022
VarSimLab
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Simulation]]

3 KB (420 words) - 17:24, 22 August 2022
WIsH
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 21:29, 6 December 2019
GATE
[[Category:Software]][[Category:Library]]

2 KB (264 words) - 19:51, 10 June 2022
RnaQUAST
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]][[Category:RNA-

2 KB (257 words) - 21:57, 21 August 2022
Phyx
[[Category:Software]][[Category:Phylogenetics]]

2 KB (264 words) - 18:23, 21 August 2022
Snp2hla
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|https://software.broadinstitute.org/mpg/snp2hla/}}

3 KB (379 words) - 20:42, 12 August 2022
Nsight
[[Category:Software]][[Category:Utility]][[Category:GPU]][[Category:Performance Analysis]]

3 KB (316 words) - 20:39, 24 August 2022
EVidenceModeler
[[Category:Software]][[Category:Phylogenetics]] The EVidenceModeler (aka EVM) software combines ab intio gene predictions and protein and transcript alignments in

3 KB (311 words) - 14:59, 27 July 2020
CycleGan
[[Category:Software]][[Category:Phylogenetics]]

2 KB (249 words) - 15:06, 14 April 2021
DeSALT
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Sequencing]]

3 KB (350 words) - 14:38, 15 August 2022
Icommands
[[Category:Software]][[Category:Utility]]

3 KB (388 words) - 18:39, 15 August 2022
DRep
[[Category:Software]][[Category:Phylogenetics]]

2 KB (272 words) - 21:21, 6 December 2019
EEGLAB
[[Category:Software]][[Category:Biology]][[Category:Biology]]

2 KB (271 words) - 14:56, 15 August 2022
MetaBCC-LR
[[Category:Software]]

6 KB (774 words) - 14:28, 15 December 2022
Kma
[[Category:Software]][[Category:Library]][[Category:Data Science]]

2 KB (292 words) - 15:51, 30 January 2023
Fastx Toolkit
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

2 KB (257 words) - 16:37, 15 August 2022
ConPADE
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 22:14, 26 August 2020
PhyloAcc
[[Category:Software]][[Category:Phylogenetics]] This is a software to detect the shift pattern of DNA substitution rate of a genomic region an

4 KB (469 words) - 20:53, 18 May 2021
QGIS
[[Category:Software]][[Category:Geospatial]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

2 KB (288 words) - 20:27, 24 August 2022
Illumina-utils
[[Category:Software]][[Category:Phylogenetics]]

2 KB (295 words) - 18:43, 15 August 2022
MOOSE
[[Category:Software]][[Category:Physics]][[Category:Simulation]]

3 KB (338 words) - 15:46, 13 August 2020
SequelQC
[[Category:Software]][[Category:Phylogenetics]]

2 KB (280 words) - 21:24, 6 December 2019
KING
[[Category:Software]][[Category:Biology]][[Category:Genomics]] [http://people.virginia.edu/~wc9c/KING/manual.html Software Manual in HTML format]

3 KB (305 words) - 19:28, 12 August 2022
Vcftools
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (400 words) - 20:55, 12 August 2022
Hiphase
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (337 words) - 20:21, 19 March 2024
Bamtools
[[Category:Software]][[Category:NGS]][[Category:Biology]][[Category:Sequencing]] |{{#vardefine:exe|}} 

2 KB (289 words) - 18:02, 12 August 2022
Gepard
[[Category:Software]][[Category:Phylogenetics]]

2 KB (241 words) - 22:10, 27 August 2020
Fastchaos
[[Category:Software]][[Category:Sequencing]]

2 KB (243 words) - 14:57, 29 July 2022
Bracken
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|https://ccb.jhu.edu/software/bracken/}}

3 KB (402 words) - 19:01, 10 June 2022
FFTW
[[Category:Software]][[Category:Library]][[Category:Compiler]][[Category:Math]]

2 KB (223 words) - 16:41, 15 August 2022
Kaiju
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (283 words) - 21:21, 6 December 2019
EpiNano
[[Category:Software]][[Category:Biology]][[Category: NGS]]

2 KB (241 words) - 18:35, 21 July 2022
DSSAT
[[Category:Software]] is a software application program that comprises crop simulation

3 KB (371 words) - 14:52, 15 August 2022
TWINSCAN
[[Category:Software]][[Category:biology]][[Category:genomics]] |{{#vardefine:url|http://mblab.wustl.edu/software.html#twinscanLink}}

3 KB (386 words) - 20:20, 27 May 2022
Category:Imaging
[[Category:Software]]

46 members (0 subcategories, 0 files) - 21:45, 24 October 2022
Tcoffee
[[Category:Software]][[Category:Biology]]

2 KB (280 words) - 20:46, 12 August 2022
Mauve
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

3 KB (448 words) - 19:49, 12 August 2022
Bismark
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (293 words) - 18:17, 12 August 2022
Megalodon
[[Category:Software]][[Category:Phylogenetics]]

2 KB (271 words) - 22:24, 8 September 2020
Nanocomp
[[Category:Software]][[Category:programming]][[Category:sequencing]]

2 KB (282 words) - 12:22, 26 August 2022
Pbsmrtpipe
[[Category:Software]][[Category:Biology]][[Category:Programming]]

2 KB (239 words) - 18:05, 15 August 2022
FEniCS
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (301 words) - 21:20, 6 December 2019
ViewBS
[[Category:Software]][[Category:Phylogenetics]]

3 KB (384 words) - 17:30, 22 August 2022
FALCON
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

3 KB (395 words) - 15:19, 15 August 2022
ROOTPy
[[Category:Software]][[Category:Data Science]]

3 KB (389 words) - 16:49, 21 August 2022
Fluent
[[Category:Software]][[Category:Fluid Dynamics]]

2 KB (266 words) - 16:46, 15 August 2022
DIYABC
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] '''Note:''' this software is installed, but not supported as the upstream authors do not consider it

2 KB (300 words) - 14:41, 15 August 2022
Liftoff
[[Category:Software]][[Category:Phylogenetics]]

3 KB (399 words) - 13:14, 23 September 2020
Haphpipe
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

3 KB (405 words) - 16:40, 14 March 2023
Basemount
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (375 words) - 18:50, 10 June 2022
Mlst
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 21:22, 6 December 2019
LAStools
[[Category:Software]][[Category:Imaging]]

2 KB (292 words) - 19:37, 15 August 2022
GDAL
[[Category:Software]][[Category:Geospatial]][[Category:Library]]

3 KB (313 words) - 18:21, 8 July 2022
VirusFinder
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] VirusFinder 2 is a new software tool for characterizing intra-host viruses through next generation sequenci

3 KB (410 words) - 21:29, 6 December 2019
FcGENE
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]][[Category:Genomics]]

3 KB (326 words) - 16:38, 15 August 2022
GSL
[[Category:Software]][[Category:Library]][[Category:Data Science]] |{{#vardefine:url|http://www.gnu.org/software/gsl}}

2 KB (300 words) - 17:27, 15 August 2022
OmniCLIP
[[Category:Software]][[Category:Phylogenetics]]

2 KB (257 words) - 14:52, 12 November 2020
Sc-im
[[Category:Software]][[Category:Visualization]][[Category:Utility]]

2 KB (272 words) - 22:07, 21 August 2022
LFMM
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (337 words) - 19:50, 15 August 2022
Tigmint
[[Category:Software]][[Category:Phylogenetics]]

3 KB (370 words) - 21:29, 6 December 2019
Maskrc-svg
[[Category:Software]][[Category:Genomics]]

2 KB (255 words) - 20:32, 26 January 2023
OneFormer
[[Category:Software]][[Category:Imaging]][[Category:Image Processing]][[Category:AI]]

2 KB (246 words) - 14:25, 7 April 2023
ASTRID
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 15:16, 12 August 2022
NCBI GenBank Tools
[[Category:Software]][[Category:Biology]][[Category:Healthcare]]

2 KB (291 words) - 14:33, 19 August 2022
MapThin
[[Category:Software]][[Category:Phylogenetics]]

2 KB (258 words) - 21:21, 6 December 2019
Sailfish
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]][[Category:RNA-Se |{{#vardefine:url|http://www.cs.cmu.edu/~ckingsf/software/sailfish/}}

4 KB (482 words) - 22:02, 21 August 2022
TAU
[[Category:Software]][[Category:library]][[Category:Performance Analysis]] |{{#vardefine:exe|}} 

4 KB (581 words) - 22:37, 24 October 2022
Dragonflye
[[Category:Software]][[Category:Sequencing]][[Category:Genomics]] https://github.com/rpetit3/dragonflye#software-included-19

2 KB (283 words) - 20:18, 12 April 2022
Localbrainage
[[Category:Software]][[Category:Biology]][[Category:Machine Learning]]

2 KB (238 words) - 19:30, 12 August 2022
RiboTaper
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://ohlerlab.mdc-berlin.de/software/RiboTaper_126/}}

3 KB (293 words) - 13:48, 20 May 2020
DecontaMiner
[[Category:Software]]

3 KB (321 words) - 14:56, 2 March 2021
SQL Developer
[[Category:Software]][[Category:Programming]][[Category:Database]] ...'<code>SQLDeveloper</code>' or '<code>sqldeveloper.sh</code>' to start the software.

3 KB (323 words) - 17:32, 15 August 2022
NGS-SDK
[[Category:Software]][[Category:biology]][[Category:Healthcare]][[Category:library]][[Category:

3 KB (320 words) - 17:11, 19 August 2022
PsRobot
[[Category:Software]][[Category:Phylogenetics]]

2 KB (242 words) - 17:12, 1 June 2022
Yolov4 darknet
[[Category:Software]][[Category:Machine Learning]]

2 KB (244 words) - 19:21, 1 June 2022
Imagej2
[[Category:Software]]

3 KB (308 words) - 16:31, 20 October 2022
Supercell
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (281 words) - 16:55, 10 June 2022
CAMP
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (255 words) - 18:00, 23 May 2022
Magenta
[[Category:Software]][[Category:Phylogenetics]]

3 KB (361 words) - 18:20, 18 August 2022
RepeatSeq
[[Category:Software]][[Category:Phylogenetics]]

2 KB (270 words) - 15:29, 27 May 2022
ResFinder
[[Category:Software]]

3 KB (342 words) - 18:41, 23 April 2021
Virsorter
[[Category:Software]][[Category:Genomics]]

2 KB (261 words) - 21:12, 21 October 2022
Juicer
[[Category:Software]][[Category:Genomics]]

3 KB (369 words) - 16:29, 15 October 2023
Bifrost
[[Category:Software]][[Category:Phylogenetics]]

2 KB (248 words) - 21:11, 6 December 2019
PBJelly
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (309 words) - 17:07, 21 August 2022
Ms
[[Category:Software]][[Category:Phylogenetics]]

2 KB (269 words) - 12:30, 19 August 2022
Dynasor
[[Category:Software]][[Category:Molecular_Dynamics]]

3 KB (416 words) - 16:47, 27 November 2023
BLAT
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (484 words) - 13:03, 15 August 2022
Eagle-rc
[[Category:Software]][[Category:Phylogenetics]]

2 KB (270 words) - 22:30, 26 August 2020
Pvconv
[[Category:Software]]

2 KB (265 words) - 21:12, 24 October 2022
RDKit
[[Category:Software]][[Category:Chemistry]]

2 KB (235 words) - 21:35, 21 August 2022
ADMB
[[Category:Software]][[Category:Math]][[Category:Modeling]]

3 KB (302 words) - 20:49, 11 August 2022
MiniCaller
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]]

2 KB (273 words) - 19:52, 12 August 2022
Hgtector
[[Category:Software]][[Category:biology]][[Category:sequencing]]

2 KB (253 words) - 17:04, 10 October 2022
UNAFold
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...compute suboptimal foldings that mimic the performance of the famous mfold software.

3 KB (359 words) - 20:53, 12 August 2022
Category:Fluid Dynamics
[[Category:Software]]

7 members (0 subcategories, 0 files) - 19:53, 22 August 2022
Vfuparr
[[Category:Software]][[Category:Sequencing]][[Category:Biology]] ...LURM systems, this workflow allows users to easily incorporate any docking software of their choice, ensuring maximum flexibility.

3 KB (392 words) - 20:35, 9 April 2024
Mosaic
[[Category:Software]][[Category:Phylogenetics]]

2 KB (282 words) - 14:15, 14 October 2021
HmmCleaner
[[Category:Software]][[Category:Phylogenetics]]

2 KB (275 words) - 22:25, 27 August 2020
Vermouth-martinize
[[Category:Software]][[Category:Phylogenetics]]

3 KB (323 words) - 14:21, 1 November 2021
Python
[[Category:Software]][[Category:Language]][[Category:Programming]] |{{#vardefine:exe|1}} 

5 KB (670 words) - 19:42, 3 February 2023
Porechop
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (294 words) - 21:23, 6 December 2019
AlphaPulldown
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] If you use this software, please cite it along the dependencies it uses internally, at least:

3 KB (300 words) - 14:11, 10 July 2023
Pandaseq
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

2 KB (239 words) - 18:08, 19 August 2022
RELION
[[Category:Software]][[Category:Biology]][[Category:Imaging]]

3 KB (434 words) - 21:42, 21 August 2022
GenePainter
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (334 words) - 21:20, 6 December 2019
Vaspkit
[[Category:Software]][[Category:Phylogenetics]]

2 KB (239 words) - 19:51, 1 June 2022
GeneTorrent
[[Category:Software]][[Category:Biology]][[Category:File Management]] Software documentation [https://cghub.ucsc.edu/docs/GeneTorrent_man_3.3.4.pdf in PDF

3 KB (316 words) - 13:54, 21 October 2022
SNAP
[[Category:Software]][[Category:biology]][[Category:sequencing]]

3 KB (372 words) - 20:42, 12 August 2022
Hecaton
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (277 words) - 18:57, 6 June 2022
Basic Linux Use
...indows. The major difference is that on Windows you get the system and the software to do what you want by learning to juggle the activities of clicking left,

6 KB (1,054 words) - 14:45, 9 November 2022
Mireap
[[Category:Software]][[Category:Biology]]

2 KB (258 words) - 20:43, 18 August 2022
VirSieve
[[Category:Software]] [[Category:Software]]

5 KB (639 words) - 18:59, 14 December 2022
Ucsc-maskoutfa
[[Category:Software]][[Category:Phylogenetics]]

2 KB (237 words) - 20:09, 1 June 2022
BWA-PSSM
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (344 words) - 21:12, 6 December 2019
Raven
[[Category:Software]][[Category:assembly]]

2 KB (284 words) - 21:14, 20 November 2023
ANGSD
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...ed genotypes. This is especially useful for low and medium depth data. The software is written in C++ and has been used on large sample sizes.

3 KB (355 words) - 12:42, 12 August 2022
QuorUM
[[Category:Software]][[Category:biology]]

2 KB (267 words) - 21:24, 6 December 2019
DDSCAT
[[Category:Software]][[Category:Astronomy]] |{{#vardefine:exe|}} 

2 KB (326 words) - 14:30, 15 August 2022
Dock
[[Category:Software]][[Category:Chemistry]] |{{#vardefine:exe|}} 

2 KB (334 words) - 20:48, 2 August 2021
HipSTR
[[Category:Software]][[Category:Phylogenetics]]

3 KB (340 words) - 14:50, 1 October 2020
Osprey
[[Category:Software]][[Category:Spectroscopy]][[Category:Neuroscience]] Osprey is an all-in-one software suite for state-of-the art processing and quantitative analysis of in-vivo

2 KB (280 words) - 18:01, 19 August 2022
Shogun
[[Category:Software]][[Category:Phylogenetics]]

2 KB (246 words) - 18:14, 1 June 2022
MAGeCK
[[Category:Software]][[Category:Phylogenetics]]

2 KB (259 words) - 21:21, 6 December 2019
Tax4Fun
[[Category:Software]][[Category:Phylogenetics]]

3 KB (303 words) - 18:29, 4 February 2020
Scala
[[Category:Software]][[Category:Programming]][[Category:Language]] object-functional programming language for general software applications.

2 KB (293 words) - 12:12, 26 August 2022
Ea-utils
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

4 KB (438 words) - 14:54, 15 August 2022
Globus
[[Category:Software]][[Category:File Management]] ...h [https://www.globus.org/globus-connect-personal Globus Connect Personal] software they can use to set up a personal collection on their computing device (Win

11 KB (1,849 words) - 14:14, 31 January 2024
Snippy
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (237 words) - 14:37, 10 June 2022
Halla
[[Category:Software]][[Category:Phylogenetics]]

3 KB (367 words) - 13:57, 25 March 2022
Generic Mapping Tools
[[Category:Software]]

3 KB (336 words) - 16:56, 10 October 2022
Phynd
[[Category:Software]][[Category:Phylogenetics]]

2 KB (242 words) - 18:13, 15 April 2020
UNCALLED
[[Category:Software]]

2 KB (281 words) - 20:53, 12 August 2022
EMAN2
[[Category:Software]][[Category:Image Processing]] |{{#vardefine:url|http://ncmi.bcm.edu/ncmi/software/counter_222/software_130}}

2 KB (258 words) - 15:00, 15 August 2022
Pbtranscript-tofu
[[Category:Software]][[Category:biology]][[Category:NGS]]

3 KB (324 words) - 20:11, 24 August 2022
Magpurify
[[Category:Software]] Each module in the software package was designed to be highly specific. This means that not all contami

3 KB (332 words) - 17:35, 24 May 2023
FLASh
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://ccb.jhu.edu/software/FLASH/}}

2 KB (297 words) - 16:44, 15 August 2022
MAJIQ
[[Category:Software]][[Category:Phylogenetics]] MAJIQ and Voila are two software packages that together detect, quantify, and visualize local splicing varia

2 KB (247 words) - 14:59, 10 June 2022
ANDI
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (286 words) - 14:11, 20 February 2023
Structure threader
[[Category:Software]] ...parallelize the runs of Structure, fastStructure, MavericK and ALStructure software.

3 KB (342 words) - 18:56, 3 June 2022
Velvet
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

4 KB (523 words) - 17:06, 14 December 2022
Finesse
[[Category:Software]][[Category:Simulation]] ...aussian beams can be used to model spatial effects. Finesse is open source software distributed for OSX, Linux, and Windows. It has benefited from years of emp

3 KB (347 words) - 00:01, 9 July 2020
IsoSel
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|http://doua.prabi.fr/software/isosel}}

3 KB (345 words) - 14:29, 26 March 2021
R MPI Example
[[Category:Software]][[Category:Compiler]]

3 KB (399 words) - 17:37, 15 August 2022
GMP
[[Category:Software]][[Category:Library]]

3 KB (373 words) - 13:43, 3 June 2022
NtEdit
[[Category:Software]][[Category:Phylogenetics]]

3 KB (316 words) - 21:23, 6 December 2019
Proovread
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (269 words) - 20:27, 12 August 2022
ITK
[[Category:Software]][[Category:Biology]] |{{#vardefine:exe|}} 

2 KB (339 words) - 19:04, 15 August 2022
Mykrobe
[[Category:Software]]

2 KB (246 words) - 16:37, 21 June 2023
FastPlast
[[Category:Software]][[Category:Phylogenetics]]

2 KB (288 words) - 20:23, 23 May 2022
PHI
[[Category:Software]][[Category:Math]]

3 KB (326 words) - 18:25, 13 July 2022
CBGpipe
[[Category:Software]][[Category:Phylogenetics]]

2 KB (255 words) - 21:59, 26 August 2020
Finder
[[Category:Software]] independent software that generatess gene annotations in GTF format. finder

3 KB (345 words) - 16:42, 15 August 2022
IMOD
[[Category:Software]][[Category:Image Processing]] Some of it is GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

3 KB (414 words) - 14:42, 14 December 2022
MASSMINE
[[Category:Software]][[Category:Data Mining]] ...u do not already have FileZilla installed, please download and install the software by visiting [https://filezilla-project.org/ filezilla-project.org].

4 KB (562 words) - 15:42, 14 December 2022
GPhoCS
[[Category:Software]][[Category:Phylogenetics]] G-PhoCS is a software package for inferring ancestral population sizes, population divergence tim

3 KB (300 words) - 21:20, 6 December 2019
ChromEvol
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (297 words) - 13:34, 15 August 2022
BPGA
[[Category:Software]][[Category:Biology]][[Category:NGS]] BPGA is an ultra-fast software package that provides comprehensive pan genome analysis of microorganisms.

2 KB (293 words) - 21:13, 6 December 2019
Rnaeditingindexer
[[Category:Software]][[Category:Biology]]

2 KB (239 words) - 22:53, 21 January 2024
RepeatMasker
[[Category:Software]][[Category:Biology]] |{{#vardefine:exe|}} 

2 KB (325 words) - 20:32, 12 August 2022
FastGEAR
[[Category:Software]][[Category:Biology]][[Category:Genomics]] FastGEAR is a software for analyzing sequence alignments.

3 KB (313 words) - 20:13, 18 October 2022
RepeatAnalysisTools
[[Category:Software]] @software{tange_2021_5013933,

4 KB (430 words) - 16:55, 15 December 2022
Sra-human-scrubber
[[Category:Software]][[Category:Genomics]]

3 KB (395 words) - 15:57, 22 August 2022
GULP
[[Category:Software]][[Category:Material Science]]

3 KB (311 words) - 18:09, 15 August 2022
Redundans
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (332 words) - 21:24, 6 December 2019
Qsiprep
[[Category:Software]] ...r processing diffusion-weighted MRI (dMRI) data. The main features of this software are:

3 KB (324 words) - 16:13, 17 October 2023
Segemehl
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:url|http://www.bioinf.uni-leipzig.de/Software/segemehl/}}

3 KB (406 words) - 22:30, 21 August 2022
Jabba
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (247 words) - 21:21, 6 December 2019
GATK
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|1}} 

4 KB (540 words) - 16:53, 15 August 2022
Jo
[[Category:Software]][[Category:Utility]]

2 KB (241 words) - 19:12, 15 August 2022
Conefor
[[Category:Software]][[Category:Biology]] Conefor is a software package that allows quantifying the importance of habitat areas and links f

3 KB (303 words) - 14:33, 2 May 2023
Pybedtools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (263 words) - 13:31, 6 October 2021
VarSim
[[Category:Software]][[Category:Phylogenetics]]

2 KB (248 words) - 14:44, 4 September 2020
TDNAscan
[[Category:Software]][[Category:Phylogenetics]] TDNAscan: A Software to Identify Complete and Truncated T-DNA insertions

2 KB (278 words) - 18:28, 7 December 2021
Pseudofinder
[[Category:Software]][[Category:Phylogenetics]]

3 KB (304 words) - 13:41, 11 October 2021
GroopM
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (263 words) - 21:20, 6 December 2019
Textract
[[Category:Software]]

3 KB (304 words) - 13:55, 21 October 2022
MaSuRCA
[[Category:Software]][[Category:Biology]][[Category:Alignment]] MaSuRCA is whole genome assembly software. It combines the efficiency of the de Bruijn graph and Overlap-Layout-Conse

3 KB (340 words) - 18:24, 18 August 2022
Screen
[[Category:Software]][[Category:Programming]][[Category:Shell]] |{{#vardefine:url|https://www.gnu.org/software/screen/}}

3 KB (441 words) - 22:30, 21 August 2022
PHITS
[[Category:Software]][[Category:Physics]]

3 KB (339 words) - 18:12, 21 August 2022
MISO
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]][[Category:RNA-

3 KB (390 words) - 20:44, 18 August 2022
XY-Meta
[[Category:Software]][[Category:Phylogenetics]]

3 KB (308 words) - 16:15, 6 June 2022
IMPUTE5
[[Category:Software]] |{{#vardefine:url|https://jmarchini.org/software/#impute-5}}

3 KB (351 words) - 18:49, 15 August 2022
CFITSIO
[[Category:Software]][[Category:Library]][[Category:Compiler]]

2 KB (291 words) - 13:26, 15 August 2022
Blocked Accounts
* Improper password in various SFTP software clients (FileZilla, etc.)

2 KB (337 words) - 21:37, 29 January 2024
Bax2bam
[[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 14:05, 10 December 2019
ClonalFrameML
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]] ClonalFrameML is a software package that performs efficient inference of

3 KB (348 words) - 13:47, 15 August 2022
BreakDancer
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (301 words) - 21:16, 6 December 2019
Maxima
[[Category:Software]][[Category:Math]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

2 KB (298 words) - 21:21, 6 December 2019
MCNP
[[Category:Software]][[Category:Physics]] ...message from RSICC’s Request History tool that contains a list all of the software for which you have been licensed to the [[Remote_Support#Email|User Support

3 KB (422 words) - 21:39, 4 April 2024
Pufferfish
[[Category:Software]][[Category:Biology]]

3 KB (351 words) - 17:32, 31 July 2023
Blink
[[Category:Software]][[Category:Genomics‏‎]]

2 KB (267 words) - 13:03, 15 August 2022
IAssembler
[[Category:Software]][[Category:Biology]][[Category:Assembly]]

3 KB (301 words) - 18:39, 15 August 2022
RIGERJ
[[Category:Software]][[Category:Phylogenetics]]

2 KB (260 words) - 21:24, 6 December 2019
GeneMarkS-T
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (296 words) - 17:25, 2 June 2022
SHAPEIT
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]]

2 KB (263 words) - 12:56, 15 August 2022
Loter
[[Category:Software]] Dias-Alves, T., Mairal, J., Blum, M.G.B., 2018. Loter: A Software Package to Infer Local Ancestry for a Wide Range of Species. Mol Biol Evol

2 KB (297 words) - 17:15, 20 March 2023
Bcftools
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (281 words) - 19:09, 11 April 2024
Oases
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Assembly]] |{{#vardefine:exe|}} 

2 KB (293 words) - 17:25, 19 August 2022
Genmap
[[Category:Software]]

2 KB (256 words) - 21:20, 17 May 2023
HOOMD
[[Category:Software]][[Category:Library]][[Category:Math]]

5 KB (607 words) - 15:40, 6 June 2022
MOTUs
[[Category:Software]][[Category:Phylogenetics]]

2 KB (262 words) - 17:44, 1 May 2020
Peneasy
[[Category:Software]]

4 KB (460 words) - 18:26, 27 May 2022
Category:ChIP-Seq
[[Category:Biology]][[Category:Software]]

7 members (0 subcategories, 0 files) - 20:57, 12 August 2022
Parsnp
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (297 words) - 21:22, 6 December 2019
SiLiX
[[Category:Software]][[Category:Phylogenetics]] The software package SiLiX (SIngle LInkage Clustering of Sequences) implements a new alg

3 KB (287 words) - 21:24, 6 December 2019
MP-EST
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

4 KB (489 words) - 12:01, 19 August 2022
GenomicTools
[[Category:Software]][[Category:NGS]][[Category:Biology]][[Category:ChIP-Seq]][[Category:RNA-Se

3 KB (385 words) - 18:58, 12 August 2022
JACUSA
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]]

2 KB (240 words) - 19:08, 15 August 2022
Tellseq
[[Category:Software]][[Category:Sequencing]][[Category:Phylogenetics]] |{{#vardefine:url|https://www.universalsequencing.com/software}}

2 KB (263 words) - 20:52, 18 May 2022
GRASS
[[Category:Software]][[Category:Geospatial]] ...ort System), is a free and open source Geographic Information System (GIS) software suite used for geospatial data management and analysis, image processing, g

5 KB (593 words) - 21:27, 14 December 2022
VirusDetect
[[Category:Software]][[Category:Phylogenetics]] VirusDetect is a software package that can efficiently and exhaustively analyze large-scale sRNA data

3 KB (377 words) - 23:22, 30 July 2020
Mvrsion
[[Category:Software]][[Category:Sequencing]]

2 KB (246 words) - 14:24, 29 November 2022
Pipits
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (299 words) - 17:06, 10 June 2022
Ibdne
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (308 words) - 17:05, 27 May 2022
ElPrep
[[Category:Software]][[Category:Phylogenetics]]

3 KB (345 words) - 21:20, 6 December 2019
EXpress
[[Category:Software]][[Category:Biology]][[Category:NGS]] This module enables the use of the eXpress software

3 KB (383 words) - 18:53, 12 August 2022
DAWGPAWS
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (381 words) - 21:20, 6 December 2019
Mrtrix3tissue
[[Category:Software]][[Category:Biology]]

2 KB (255 words) - 16:51, 30 January 2023
RiboPicker
[[Category:Software]][[Category:Biology]][[Category:Sequencing]] |{{#vardefine:exe|1}} 

3 KB (377 words) - 21:50, 21 August 2022
Cp2k
[[Category:Software]][[Category:Chemistry]] CP2K is a quantum chemistry and solid state physics software package that can perform atomistic simulations of solid state, liquid, mole

3 KB (371 words) - 22:15, 26 August 2020
Funannotate
[[Category:Software]][[Category:Phylogenetics]] ...t has evolved over time to accomodate larger genomes. The impetus for this software package was to be able to accurately and easily annotate a genome for submi

3 KB (375 words) - 16:51, 15 August 2022
TAPIS
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (273 words) - 16:14, 10 June 2022
AutoDock
[[Category:Software]][[Category:Biology]]

2 KB (268 words) - 15:47, 10 June 2022
Monolix
[[Category:Software]][[Category:Modeling]][[Category:Biology]]

2 KB (287 words) - 11:57, 19 August 2022
OpenPIV-python
[[Category:Software]][[Category:Programming]][[Category:Imaging]] OpenPIV is open source Particle Image Velocimetry analysis software.

2 KB (291 words) - 12:23, 26 August 2022
Homopolish
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

3 KB (298 words) - 15:54, 6 July 2022
ShapeMapper
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://www.chem.unc.edu/rna/software.html}}

3 KB (387 words) - 21:24, 6 December 2019
Hificnv
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (292 words) - 20:23, 20 March 2024
FreeBayes
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

2 KB (302 words) - 18:55, 12 August 2022
GFF-Ex
[[Category:Software]][[Category:Phylogenetics]]

2 KB (277 words) - 22:10, 27 August 2020
AI Examples
...les for computer vision and natural language processing tasks using the AI software stacks on HiPerGator. Users may copy these examples to their own space, add ...MultiNode MONAI] || distributed compute, computer vision || Use the MONAI software to train an image classifier on multiple nodes.

3 KB (367 words) - 18:50, 30 August 2022
PHAST
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] PHAST is a freely available software package for comparative and evolutionary genomics. It consists of about hal

3 KB (320 words) - 17:17, 10 June 2022
Freesurfer
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] Starting with freesurfer/6.0.0 the software is available as a Singularity container. To run any executable use the 'lau

3 KB (323 words) - 20:09, 12 August 2022
Pygot
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (248 words) - 21:24, 6 December 2019
Hpsandbox
[[Category:Software]]

2 KB (264 words) - 22:27, 1 February 2023
M5nr
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (286 words) - 19:46, 12 August 2022
TRNAscan-Se
[[Category:Software]][[Category:biology]][[Category:NGS]] ...nce analysis, but is applicable to other DNAs as well. It applies our COVE software (see below) with a carefully built tRNA covariance model, while getting aro

3 KB (389 words) - 20:53, 12 August 2022
SPM
[[Category:Software]][[Category:Biology]] |{{#vardefine:url|http://www.fil.ion.ucl.ac.uk/spm/software/spm8/}}

3 KB (327 words) - 17:00, 13 February 2024
Tbb
[[Category:Software]][[Category:library]]

2 KB (259 words) - 21:29, 6 December 2019
Clview
[[Category:Software]][[Category:Biology]]

2 KB (252 words) - 13:48, 15 August 2022
Consed
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (348 words) - 18:39, 12 August 2022
Meryl
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 22:26, 8 September 2020
CViT
[[Category:Software]][[Category:Programming]][[Category:Library]]

2 KB (294 words) - 12:09, 26 August 2022
Piranha
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://smithlabresearch.org/software/piranha/}}

2 KB (266 words) - 16:02, 10 June 2022
SimSeq
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:NGS]]

2 KB (283 words) - 22:59, 21 August 2022
Mlpack
[[Category:Software]][[Category:Library]] ...M. Lozhnikov, Y. Mentekidis, S. Ghaisas, S. Zhang. Journal of Open Source Software 3:26, 2018.]

3 KB (301 words) - 19:43, 15 December 2020
LZO
[[Category:Software]][[Category:Library]][[Category:Compression]]

3 KB (317 words) - 20:38, 10 June 2022
RNAsalsa
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

3 KB (368 words) - 21:24, 6 December 2019
Pycharm-pro
[[Category:Software]]

2 KB (271 words) - 15:56, 27 June 2023
SpliceTrap
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

3 KB (347 words) - 20:44, 12 August 2022
MasHmap
[[Category:Software]][[Category:Phylogenetics]]

3 KB (359 words) - 17:28, 27 May 2022
LIBZMQ
[[Category:Software]][[Category:Library]]

2 KB (274 words) - 17:36, 31 May 2022
Samba Access
...:''' There is a known issue with the CIFS client in Mac Finder. The Finder software in current version of MacOS does not have a refresh button to update conten

5 KB (816 words) - 17:31, 31 August 2023
GUAVA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (351 words) - 21:20, 6 December 2019
ACTC
[[Category:Software]][[Category:Biology]]

2 KB (234 words) - 14:36, 7 April 2023
VAST-TOOLS
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

2 KB (264 words) - 17:26, 22 August 2022
Linksbrowser
[[Category:Software]][[Category:Web]]

2 KB (257 words) - 17:50, 15 August 2022
MZMine
[[Category:Software]][[Category:Spectroscopy]][[Category:Biology]]

3 KB (417 words) - 13:28, 7 July 2023
APT
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

3 KB (340 words) - 14:32, 12 August 2022
Fastai
[[Category:Software]][[Category:Phylogenetics]]

2 KB (248 words) - 18:03, 13 November 2020
Clipkit
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]] ClipKIT: a multiple sequence alignment trimming software for accurate phylogenomic inference. Steenwyk et al. 2020, PLoS Biology. do

2 KB (276 words) - 13:29, 15 August 2022
SortMeRNA
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:NGS]]

3 KB (299 words) - 17:00, 10 June 2022
MiRge
[[Category:Software]][[Category:Phylogenetics]]

2 KB (279 words) - 21:22, 6 December 2019
InStruct
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 18:00, 11 March 2020
ReCOGnizer
[[Category:Software]][[Category:Phylogenetics]]

3 KB (327 words) - 17:03, 3 December 2020
EPACTS
[[Category:Software]][[Category:Biology]][[Category:Biology]][[Category:Genomics]] ...Efficient and Parallelizable Association Container Toolbox) is a versatile software pipeline to perform various statistical tests for identifying genome-wide a

2 KB (269 words) - 18:52, 12 August 2022
PILON
[[Category:Software]][[Category:biology]][[Category:NGS]][[Category:phylogenetics]] Pilon is a software tool which can be used to:

3 KB (321 words) - 20:23, 12 August 2022
Ucsc-fafiltern
[[Category:phylogenetics]][[Category:Software]]

2 KB (244 words) - 17:11, 22 August 2022
EQtlBma
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (254 words) - 18:52, 12 August 2022
Jq
[[Category:Software]][[Category:Utility]]

2 KB (241 words) - 19:12, 15 August 2022
SqueezeMeta
[[Category:Software]][[Category:Phylogenetics]]

2 KB (255 words) - 15:47, 28 April 2022
Localizer
[[Category:Software]][[Category:Phylogenetics]]

2 KB (272 words) - 20:18, 26 May 2022
Glactools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (247 words) - 15:07, 20 May 2020
Merge peaks
[[Category:Software]][[Category:Workflow Automation]]

2 KB (254 words) - 18:51, 15 August 2022
Salmon
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]

3 KB (305 words) - 19:29, 3 June 2022
GeneMarkS
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (296 words) - 16:45, 27 May 2022
Genrich
[[Category:Software]][[Category:Phylogenetics]]

2 KB (265 words) - 21:21, 6 December 2019
Slicer
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] ...le platforms, including Windows, Linux and Mac Os X. 3DSlicer is a desktop software used in medical and biomedical imaging. It serves as a development platform

3 KB (346 words) - 15:42, 8 April 2024
Plink
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:Genomics]]

3 KB (342 words) - 20:25, 12 August 2022
Ont tutorial cas9
[[Category:Software]][[Category:Phylogenetics]]

2 KB (289 words) - 18:38, 2 June 2022
CARTA
[[Category:Software]][[Category:Image Processing]]

3 KB (327 words) - 19:15, 23 May 2022
Authentication With MFA
...ntually, multiple failures of the password login will lead to our security software blocking your client due to too many incorrect password attempts, and event

6 KB (1,008 words) - 21:10, 14 July 2023
Purge haplotigs
[[Category:Software]]

3 KB (356 words) - 20:27, 12 August 2022
DECX
[[Category:Software]][[Category:Phylogenetics]]

2 KB (255 words) - 17:54, 26 April 2021
ISOWN
[[Category:Software]][[Category:Phylogenetics]]

2 KB (268 words) - 21:21, 6 December 2019
Ksnp
[[Category:Software]][[Category:biology]][[Category:phylogenetics]][[Category:Variant Calling]] kSNP v2 software for alignment-free SNP discovery and phylogenetics of hundreds

3 KB (327 words) - 12:56, 15 August 2022
Graph annotation
[[Category:Software]][[Category:Phylogenetics]]

2 KB (276 words) - 21:20, 6 December 2019
TrackTools
[[Category:Software]][[Category:Utility]] |{{#vardefine:url|http://marecilab.mbi.ufl.edu/software/TrackTools/TrackTools.zip}}

2 KB (251 words) - 16:40, 22 August 2022
ALLMAPS
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (361 words) - 21:11, 6 December 2019
Molpro
[[Category:Software]]

2 KB (277 words) - 20:01, 27 November 2023
Category:Alignment
[[Category:Biology]][[Category:Software]]

24 members (0 subcategories, 0 files) - 15:24, 23 August 2022
EGSnrc
[[Category:Software]][[Category:Phylogenetics]] ...eleased in 2000, as a complete overhaul of the Electron Gamma Shower (EGS) software package originally developed at the Stanford Linear Accelerator Center (SLA

3 KB (327 words) - 14:57, 15 August 2022
Themisto
[[Category:Software]]

3 KB (401 words) - 20:57, 3 June 2022
Rnaseqlib
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:RNA-Seq]]

2 KB (247 words) - 15:15, 10 June 2022
Category:Neuroscience
[[Category:Software]]

17 members (0 subcategories, 0 files) - 17:19, 6 June 2022
DS9
[[Category:Software]][[Category:Imaging]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

3 KB (322 words) - 13:07, 6 June 2022
PGAP
[[Category:Software]]

3 KB (393 words) - 14:29, 6 July 2022
Trimesh
[[Category:Software]] Trimesh [Computer software]. (2019). Retrieved from https://github.com/mikedh/trimesh

2 KB (288 words) - 15:36, 9 March 2023
Category:Compiler
[[Category:Software]] The [https://software.intel.com/en-us/intel-parallel-studio-xe Intel Compiler Suite] provides For

24 members (0 subcategories, 0 files) - 17:51, 27 September 2023
Impg
[[Category:Software]][[Category:Alignment]][[Category:Biology]]

3 KB (392 words) - 21:22, 10 April 2024
Maker
[[Category:Software]][[Category:Biology]] |{{#vardefine:url|http://www.yandell-lab.org/software/maker.html}}

3 KB (387 words) - 18:20, 18 August 2022
Humann2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (348 words) - 22:26, 27 August 2020
Mitsuba2
[[Category:Software]][[Category:Graphics]]

3 KB (302 words) - 20:45, 18 August 2022
MentaLiST
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (368 words) - 18:51, 10 June 2022
Groovy
[[Category:Software]][[Category:Programming]]

2 KB (281 words) - 21:21, 6 December 2019
TRITONSERVER
[[Category:Software]][[Category:Machine Learning]]

2 KB (298 words) - 20:06, 21 August 2022
Fpocket
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (268 words) - 19:02, 21 July 2022
SST-Core
[[Category:Software]][[Category:Simulation]]

3 KB (324 words) - 21:24, 6 December 2019
JVARKIT
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (251 words) - 21:21, 6 December 2019
SQANTI2
[[Category:Software]][[Category:Phylogenetics]]

2 KB (239 words) - 18:47, 1 June 2022
TraitRate
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (292 words) - 16:54, 22 August 2022
SMS
[[Category:Software]][[Category:biology]]

2 KB (267 words) - 20:41, 12 August 2022
ARC
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...and 2) reduce reference bias as compared to mapping based approaches. The software is designed to work in situations where a whole-genome assembly is not the

3 KB (430 words) - 14:32, 12 August 2022
Proteinortho
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://www.bioinf.uni-leipzig.de/Software/proteinortho/index.html}}

2 KB (302 words) - 20:27, 12 August 2022
MixMHC2pred
[[Category:Software]][[Category:Phylogenetics]]

2 KB (275 words) - 22:40, 8 September 2020
Genewalk
[[Category:Software]][[Category:Phylogenetics]]

2 KB (274 words) - 18:30, 16 May 2023
UKFractography
[[Category:Software]][[Category:Phylogenetics]]

3 KB (331 words) - 20:13, 1 June 2022
MECAT
[[Category:Software]][[Category:Phylogenetics]]

3 KB (324 words) - 18:29, 18 August 2022
OMNIVERSE
[[Category:Software]][[Category:GPU]]

2 KB (272 words) - 21:05, 31 May 2023
MarkerMiner
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (385 words) - 19:47, 12 August 2022
PySLURM
[[Category:Software]][[Category:Scheduler Apps]]

2 KB (235 words) - 18:29, 11 November 2022
Velocyto
[[Category:software]][[Category:biology]][[Category:sequencing]]

2 KB (275 words) - 00:33, 25 May 2023
S.A.G.E
[[Category:Software]][[Category:Phylogenetics]] is a free software package containing programs for use in the genetic analysis of family, pedi

2 KB (277 words) - 15:17, 10 September 2021
AliStat
[[Category:Software]][[Category:Phylogenetics]]

3 KB (315 words) - 20:18, 1 October 2020
Ldsc
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

2 KB (283 words) - 13:30, 15 August 2022
CLARK
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (271 words) - 16:28, 10 June 2022
Resolve
[[Category:Software]] ...tion, visual effects, motion graphics and audio post production all in one software tool.

2 KB (261 words) - 13:59, 25 July 2023
Glueviz
[[Category:Software]][[Category:Phylogenetics]]

2 KB (248 words) - 17:11, 15 August 2022
Metaxa2
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:sequencing]] |{{#vardefine:url|http://microbiology.se/software/metaxa2/}}

3 KB (300 words) - 19:29, 18 August 2022
Dynare
[[Category:Software]][[Category:Math]] Dynare is a software platform for handling a wide class of economic models, in particular dynami

3 KB (382 words) - 21:20, 6 December 2019
Quickquartet
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (317 words) - 21:02, 21 August 2022
TetGen
[[Category:Software]][[Category:Modeling]] |{{#vardefine:url|http://wias-berlin.de/software/tetgen}}

2 KB (253 words) - 16:28, 22 August 2022
Happy
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (257 words) - 18:15, 15 August 2022
BatMeth2
[[Category:Software]]

3 KB (324 words) - 18:57, 17 September 2021
PurgeDups
[[Category:Software]][[Category:Phylogenetics]]

2 KB (257 words) - 18:50, 27 May 2022
Pangolin
[[Category:Software]][[Category:Phylogenetics]] Software package for assigning SARS-CoV-2 genome sequences to global lineages.

2 KB (249 words) - 15:38, 28 January 2021
Auto3DEM
[[Category:Software]][[Category:Image Processing]] |{{#vardefine:url|http://cryoem.ucsd.edu/wikis/software/start.php?id=auto3dem:home}}

3 KB (433 words) - 15:24, 12 August 2022
Pbcore
[[Category:Software]][[Category:biology]]

2 KB (244 words) - 20:16, 12 August 2022
AMICO
[[Category:Software]][[Category:Imaging]][[Category:Library]][[Category:Math]]

2 KB (247 words) - 12:40, 12 August 2022
Trilinos Configuration
[[Category:Software]]

2 KB (246 words) - 20:40, 21 June 2017
RADICAL
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://desalle.amnh.org/software.html}}

2 KB (295 words) - 21:28, 21 August 2022
Giggle
[[Category:Software]]

2 KB (268 words) - 20:58, 24 February 2023
Stylegan3
[[Category:Software]][[Category:Machine Learning]][[Category:Image Processing]] ...generative image modeling. This module provides access to the StyleGAN 3 software.

3 KB (298 words) - 16:09, 22 August 2022
MAFFT
[[Category:Software]][[Category:Biology]][[Category:Sequencing]] |{{#vardefine:url|http://mafft.cbrc.jp/alignment/software/}}

2 KB (295 words) - 20:23, 15 August 2022
FlowCraft
[[Category:Software]][[Category:Phylogenetics]]

2 KB (246 words) - 14:18, 10 July 2020
IVar
[[Category:Software]]

3 KB (335 words) - 18:36, 26 March 2021
HyDe
[[Category:Software]][[Category:Phylogenetics]] HyDe is a software package that detects hybridization in phylogenomic data sets using phylogen

3 KB (301 words) - 20:41, 30 September 2020
GROMACS
[[Category:Software]][[Category:Chemistry]][[Category:Molecular Dynamics]]

4 KB (556 words) - 19:16, 5 January 2023
Sourmash
[[Category:Software]][[Category:Phylogenetics]]

2 KB (262 words) - 15:45, 22 August 2022
ATLAS
[[Category:Software]][[Category:Library]][[Category:Data Science]] |{{#vardefine:url|http://www.gnu.org/software/gsl}}

3 KB (317 words) - 15:19, 12 August 2022
OpenCL
[[Category:Software]][[Category:Phylogenetics]]

3 KB (365 words) - 17:52, 19 August 2022
IsPcr
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (251 words) - 21:22, 6 December 2019
Fastq-pair
[[Category:Software]][[Category:Phylogenetics]]

2 KB (277 words) - 16:33, 27 May 2022
CAP3
[[Category:Software]][[Category:Biology]][[Category:Assembly]] |{{#vardefine:exe|}} 

2 KB (302 words) - 13:19, 15 August 2022
Strelka
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (369 words) - 14:24, 10 October 2023
NextDenovo
[[Category:Software]][[Category:Phylogenetics]]

3 KB (312 words) - 18:03, 10 May 2021
Software Development
#REDIRECT [[Software Development Policies]]

43 bytes (4 words) - 20:46, 6 June 2022
WhatsHap
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-b

2 KB (269 words) - 21:29, 6 December 2019
Read2tree
[[Category:Software]][[Category:Phylogenetics]] read2tree is a software tool that allows users to obtain alignment matrices for tree inference. It

2 KB (292 words) - 18:42, 12 July 2023
Sambamba
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (299 words) - 20:33, 12 August 2022
LASTZ
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (284 words) - 19:30, 12 August 2022
Geomxngspipeline
[[Category:Software]]

3 KB (332 words) - 17:51, 29 January 2024
Cutadapt
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

2 KB (263 words) - 18:44, 12 August 2022
FASTphase
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|http://stephenslab.uchicago.edu/software.html#fastphase}}

2 KB (282 words) - 21:59, 27 August 2020
Smetana
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 18:32, 1 June 2022
NextGenMap
[[Category:Software]][[Category:Phylogenetics]]

3 KB (309 words) - 16:24, 19 August 2022
BayesR
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (253 words) - 15:01, 10 June 2022
FAST
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (358 words) - 21:21, 6 December 2019
Anchorwave
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (367 words) - 21:10, 20 September 2023
Scythe
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (262 words) - 20:36, 12 August 2022
Vcflib
[[Category:Software]][[Category:biology]][[Category:genomics]]

3 KB (390 words) - 20:54, 12 August 2022
UCSC
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

3 KB (349 words) - 20:53, 12 August 2022
KMC
[[Category:Software]][[Category:Phylogenetics]]

3 KB (343 words) - 14:34, 4 September 2020
WaveGAN
[[Category:Software]]

2 KB (274 words) - 17:55, 15 August 2022
Nsightsys
[[Category:Software]][[Category:Utility]][[Category:GPU]][[Category:Performance Analysis]]

2 KB (278 words) - 20:39, 24 August 2022
Umi-tools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 14:46, 4 September 2020
Varpipe-wgs
[[Category:Software]][[Category:Sequqncing]][[Category:Biology]]

2 KB (261 words) - 16:22, 15 March 2023
Shovill
[[Category:Software]]

2 KB (286 words) - 18:13, 23 August 2022
Go
[[Category:Software]][[Category:Language]]

3 KB (305 words) - 19:05, 6 June 2022
Asteroid
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

3 KB (380 words) - 16:32, 1 February 2023
PfamScan
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (335 words) - 20:19, 12 August 2022
SCRATCH-1D
[[Category:Software]][[Category:biology]][[Category:NGS]]

3 KB (381 words) - 20:35, 12 August 2022
Mothur
[[Category:Software]][[Category:Biology]] ...Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol,

3 KB (321 words) - 12:00, 19 August 2022
ClustalW
[[Category:Software]][[Category:Biology]][[Category:Alignment]]

2 KB (265 words) - 18:37, 12 August 2022
Parabricks
[[Category:Software]][[Category:Phylogenetics]] ...ardefine:url|https://www.nvidia.com/en-us/docs/parabricks/quickstart-guide/software-overview/}}

4 KB (574 words) - 21:25, 14 December 2022
Haplomerger2
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...onsists of a set of executables as well as wrappers for several third-part software.

3 KB (339 words) - 19:05, 12 August 2022
Armadillo
[[Category:Software]][[Category:Library]][[Category:Compiler]][[Category:Math]]

2 KB (269 words) - 14:33, 12 August 2022
LibMesh
[[Category:Software]][[Category:Math]]

2 KB (281 words) - 19:51, 15 August 2022
IDR
[[Category:Software]][[Category:Phylogenetics]]

3 KB (392 words) - 15:50, 12 December 2019
Gubbins
[[Category:Software]][[Category:Phylogenetics]]

3 KB (335 words) - 17:28, 15 August 2022
FGTPartitioner
[[Category:Software]] ...stry breakpoints in large genome-wide SNP datasets. Journal of Open Source Software, 5(46), 2030, https://doi.org/10.21105/joss.02030

2 KB (266 words) - 19:05, 28 June 2023
PIA2
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (249 words) - 21:22, 6 December 2019
HaMStR
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (420 words) - 20:09, 12 August 2022
DoGFinder
[[Category:Software]][[Category:Phylogenetics]] DoGFinder software is a package that identifies DoGs and quantifies their expression levels, f

2 KB (252 words) - 21:58, 3 November 2020
Jutils
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

3 KB (345 words) - 13:30, 15 August 2022
RACA
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (235 words) - 19:45, 10 June 2022
BAM-matcher
[[Category:Software]][[Category:Phylogenetics]]

3 KB (324 words) - 21:07, 6 December 2019
MHCflurry
[[Category:Software]][[Category:Phylogenetics]]

3 KB (322 words) - 16:07, 21 February 2020
IGB
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (257 words) - 18:41, 15 August 2022
Fiji
[[Category:Software]][[Category:Image Processing]]

2 KB (248 words) - 16:42, 15 August 2022
Jellyfish
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (333 words) - 19:27, 12 August 2022
FragGeneScan
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

2 KB (232 words) - 16:48, 15 August 2022
Amptorch
[[Category:Software]][[Category:Phylogenetics]]

3 KB (295 words) - 19:11, 5 April 2022
AMAS
[[Category:Software]][[Category:Phylogenetics]]

2 KB (250 words) - 12:38, 12 August 2022
Dlib
[[Category:Software]][[Category:Phylogenetics]] ...lkit containing machine learning algorithms and tools for creating complex software in C++ to solve real world problems. See http://dlib.net for the main proje

2 KB (269 words) - 13:11, 4 May 2020
Qctool
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 19:12, 2 June 2022
REAPR
[[Category:Software]][[Category:Biology]][[Category:Assembly]] |{{#vardefine:url|http://www.sanger.ac.uk/resources/software/reapr/#t_2}}

3 KB (320 words) - 21:35, 21 August 2022
Email storage alert
[[Category:Software]]

2 KB (231 words) - 21:37, 5 July 2023
Satsuma
[[Category:Software]][[Category:Phylogenetics]]

3 KB (332 words) - 21:24, 6 December 2019
ParaView
[[Category:Software]][[Category:Data Science]]

3 KB (416 words) - 21:28, 13 October 2023
MASS
[[Category:Software]][[Category:Genomics]][[Category:Biology]][[Category:Neuroscience]] Multi Atlas Skull Stripping (MASS) [ARAD2013], is a software package designed for robust and accurate brain extraction, applicable for b

2 KB (269 words) - 19:02, 10 October 2022
AltAnalyze
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...), microarray platforms (Gene 1.0, Exon 1.0, junction and 3' arrays). This software requires no advanced knowledge of bioinformatics programs or scripting or a

3 KB (398 words) - 19:14, 10 June 2022
Bactopia
[[Category:Software]][[Category:Genomics]]

2 KB (292 words) - 21:38, 10 January 2023
Rebaler
[[Category:Software]][[Category:Phylogenetics]]

2 KB (252 words) - 18:00, 1 June 2022
EnergyPlus
[[Category:Software]][[Category:Simulation]]

2 KB (266 words) - 13:34, 31 July 2020
Open3d
[[Category:Software]][[Category:Graphics]] Open3D is an open-source library that supports rapid development of software that deals with 3D data. The Open3D frontend exposes a set of carefully sel

3 KB (414 words) - 17:16, 7 July 2023
Fqtools
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] fqtools is a software suite for fast processing of FASTQ files. Various file manipulations are su

3 KB (359 words) - 16:47, 15 August 2022
MultiQC
[[Category:Software]][[Category:Biology]][[Category:ChIP-Seq]]

2 KB (285 words) - 19:54, 12 August 2022
Ncbi cli
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Library]]

3 KB (306 words) - 15:47, 9 June 2023

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