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Page title matches

Category:Software
Or you can browse through the sub-categories or software package names in the table below. To add a documentation page for a new piece of software installed into /apps please go to [[Add New App Page]].

2,137 members (62 subcategories, 0 files) - 19:53, 20 February 2024
Software Development
#REDIRECT [[Software Development Policies]]

43 bytes (4 words) - 20:46, 6 June 2022
Installed Software

26 bytes (2 words) - 17:41, 28 September 2017
Software Development Policies
==External Software Components== ...d to get a security review or risk assessment for such software. Only when software is exposed to the outside world, e.g. as part of PubApps, will a security r

533 bytes (84 words) - 15:43, 19 August 2022

Page text matches

Merqury
[[Category:Software]][[Category:Phylogenetics]]

3 KB (306 words) - 13:54, 12 August 2020
AAFTF
[[Category:Software]][[Category:Biology]][[Category:Pipeline]][[Category:Assembly]]

2 KB (245 words) - 20:45, 11 August 2022
Fairseq
[[Category:Software]][[Category:Modeling]][[Category:Machine Learning]]

3 KB (296 words) - 15:18, 15 August 2022
Talon
[[Category:Software]]

3 KB (321 words) - 15:13, 23 September 2022
EDTA
[[Category:Software]][[Category:Genomics]]

4 KB (474 words) - 21:27, 14 September 2023
FASTA
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

2 KB (320 words) - 18:54, 12 August 2022
Ambertools
[[Category:Software]][[Category:Imaging]][[Category:Library]][[Category:Math]]

3 KB (426 words) - 14:18, 10 July 2023
Intervene
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (295 words) - 21:21, 6 December 2019
Mopac
[[Category:Software]] MOPAC[1], the Molecular Orbital PACkage, is software for performing quantum chemistry calculations based on semiempirical thermo

3 KB (292 words) - 15:05, 8 April 2024
RNAmmer
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]

3 KB (328 words) - 17:35, 10 June 2022
CutRunTools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (266 words) - 22:20, 26 August 2020
Convert3D
[[Category:Software]]

2 KB (279 words) - 17:38, 15 August 2022
RSeQC
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

3 KB (328 words) - 17:48, 10 June 2022
MIRA
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Assembly]] |{{#vardefine:exe|}} 

2 KB (313 words) - 20:42, 18 August 2022
GetOrganelle
[[Category:Software]][[Category:Phylogenetics]]

2 KB (275 words) - 21:21, 6 December 2019
FAR
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

2 KB (298 words) - 18:54, 12 August 2022
YAHA
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (320 words) - 20:56, 12 August 2022
Category:Variant Calling
[[Category:Software]][[Category:Biology]]

13 members (0 subcategories, 0 files) - 19:51, 22 August 2022
ETE3
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

3 KB (400 words) - 19:13, 10 June 2022
GRACKLE
[[Category:Software]][[Category:Library]][[Category:Compiler]][[Category:Astronomy]]

2 KB (294 words) - 17:18, 15 August 2022
DScribe
[[Category:Software]][[Category:Machine Learning]]

2 KB (267 words) - 16:52, 17 December 2021
CNVnator
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (251 words) - 15:34, 10 June 2022
LMAP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (330 words) - 20:03, 15 August 2022
Category:Assembly
[[Category:Biology]][[Category:NGS]][[Category:Software]] Short Sequence Assembly software.

20 members (0 subcategories, 0 files) - 15:24, 23 August 2022
PerM
[[Category:Software]][[Category:NGS]][[Category:Biology]][[Category:Mapping]] PerM is a software package which was designed to perform highly efficient genome scale alignme

3 KB (396 words) - 17:40, 21 August 2022
GraphViz
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] ...nd networks. It has important applications in networking, bioinformatics, software engineering, database and web design, machine learning, and in visual inter

2 KB (276 words) - 19:03, 12 August 2022
Toil
[[Category:Software]][[Category:biology]]

2 KB (258 words) - 20:47, 12 August 2022
Category:Simulation
[[Category:Software]] Hardware or software environment simulation.

16 members (0 subcategories, 0 files) - 18:44, 7 July 2017
Macaulay2
[[Category:Software]][[Category:Phylogenetics]] A software system for research in algebraic geometry

2 KB (246 words) - 20:23, 15 August 2022
Ksrates
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

2 KB (264 words) - 13:30, 15 August 2022
MIDAS
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (305 words) - 17:23, 10 June 2022
Dcmstack
[[Category:Software]][[Category:Biology]][[Category:Imaging]]

2 KB (272 words) - 14:29, 15 August 2022
Mxnet
[[Category:Software]][[Category:healthcare]]

2 KB (265 words) - 22:02, 10 October 2022
Garfield
[[Category:Software]][[Category:Genomics]]

3 KB (342 words) - 22:51, 30 November 2022
MOABS
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (291 words) - 19:53, 12 August 2022
Uropa
[[Category:Software]]

3 KB (337 words) - 15:42, 6 September 2022
Pyweka
[[Category:Software]][[Category:Phylogenetics]]

2 KB (265 words) - 17:35, 1 June 2022
SourceTracker2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (357 words) - 14:19, 14 September 2020
FlairNLP
[[Category:Software]][[Category:Machine Learning]]

3 KB (419 words) - 15:42, 25 August 2022
NeEstimator
[[Category:Software]][[Category:Biology]] |{{#vardefine:url|http://www.molecularfisherieslaboratory.com.au/neestimator-software/}}

3 KB (375 words) - 19:56, 12 August 2022
BayesAss
[[Category:Software]][[Category:Phylogenetics]]

2 KB (266 words) - 21:13, 6 December 2019
BOLT-LMM
[[Category:Software]][[Category:Phylogenetics]] The BOLT-LMM software package currently consists of two main algorithms, the BOLT-LMM algorithm f

2 KB (289 words) - 16:24, 2 January 2020
NextPolish
[[Category:Software]][[Category:Phylogenetics]]

3 KB (317 words) - 13:55, 30 November 2020
Ferret
[[Category:Software]][[Category: Geospatial]][[Category:Climate]][[Category:Visualization]][[Ca |{{#vardefine:exe|}} 

3 KB (359 words) - 20:26, 24 August 2022
PyDeface
[[Category:Software]][[Category:Imaging]]

2 KB (237 words) - 20:34, 24 August 2022
Blitz
[[Category:Software]][[Category:Library]]

3 KB (303 words) - 21:19, 6 December 2019
Boost
[[Category:Software]][[Category:Library]][[Category:Programming]][[Category:Compiler]]

3 KB (350 words) - 13:06, 15 August 2022
PBCCS
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 17:07, 21 August 2022
Release
[[Category:Software]][[Category:Machine Learning]][[Category:Molecular Dynamics]]

2 KB (272 words) - 14:24, 11 October 2022
FastANI
[[Category:Software]][[Category:Phylogenetics]]

3 KB (380 words) - 21:21, 6 December 2019
MongoDB
[[Category:Software]][[Category:Database]]

3 KB (340 words) - 19:22, 11 February 2021
MAGMA-GWAS
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://ctg.cncr.nl/software/magma}}

2 KB (273 words) - 19:35, 23 February 2021
MGERT
[[Category:Software]][[Category:Phylogenetics]]

3 KB (305 words) - 14:20, 15 September 2020
PLAST
[[Category:Software]][[Category:Biology]] PLAST runs 3 to 5 times faster than the NCBI-BLAST software when processing

3 KB (320 words) - 20:23, 12 August 2022
Flex
[[Category:Software]][[Category:Programming]]

2 KB (266 words) - 19:54, 3 June 2022
Nextflow
[[Category:Software]][[Category:Biology]][[Category:Workflow Automation]] Nextflow enables scalable and reproducible scientific workflows using software containers. It allows the adaptation of pipelines written in the most commo

3 KB (336 words) - 16:24, 19 August 2022
PAML
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://abacus.gene.ucl.ac.uk/software/paml.html}}

3 KB (367 words) - 20:12, 12 August 2022
BrainIAK
[[Category:Software]][[Category:Imaging]]

3 KB (351 words) - 16:19, 27 May 2022
Knime
[[Category:Software]] KNIME Analytics Platform is an open source software that allows users to access, blend, analyze, and visualize data, without an

3 KB (318 words) - 14:46, 9 June 2023
Roguenarok
[[Category:Software]]

2 KB (226 words) - 16:07, 18 April 2023
Rolling Upgrade from RHEL7 to RHEL8
...at Enterprise Linux version 7 (RHEL-7) to version 8 (RHEL-8). The upgraded software environment includes updates to important components including, but not lim Some programs/workflows run in the updated software environment without any modification, and some require recompilation or ada

1 KB (164 words) - 16:06, 28 September 2023
GEOS
[[Category:Software]][[Category:Library]][[Category:Data Science]]

3 KB (307 words) - 17:05, 15 August 2022
GAL
[[Category:Software]][[Category:Phylogenetics]]

2 KB (250 words) - 21:20, 6 December 2019
Tophat
[[Category:Software]][[Category:NGS]][[Category:Biology]][[Category:Sequencing]] |{{#vardefine:exe|1}} 

3 KB (366 words) - 16:39, 22 August 2022
CUDA Examples
[[Category:Software]]

12 KB (1,540 words) - 17:09, 21 December 2022
CIRCexplorer
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]

3 KB (308 words) - 18:29, 12 August 2022
Emerald
[[Category:Software]][[Category:Biology]]

3 KB (324 words) - 19:16, 29 October 2023
OptiType
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (296 words) - 16:37, 10 June 2022
Github-cli
[[Category:Software]]

2 KB (266 words) - 20:06, 19 December 2023
BRIG
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (278 words) - 16:25, 10 June 2022
Bertini
[[Category:Software]][[Category:Math]] Software for solving polynomial systems

2 KB (248 words) - 12:48, 15 August 2022
PyEGA3
[[Category:Software]]

3 KB (340 words) - 19:01, 29 June 2021
IQ-TREE
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://www.cibiv.at/software/iqtree/}}

3 KB (395 words) - 14:51, 14 December 2022
MORPHEUS
[[Category:Software]][[Category:Machine Learning]]

3 KB (337 words) - 19:01, 14 March 2023
Unicycler
[[Category:Software]][[Category:Phylogenetics]]

2 KB (292 words) - 21:29, 6 December 2019
SIGffRid
[[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 18:17, 1 June 2022
ExaBayes
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|http://sco.h-its.org/exelixis/web/software/exabayes/}}

7 KB (886 words) - 21:12, 21 December 2022
Vt
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (273 words) - 16:13, 10 June 2022
Roary
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (308 words) - 17:13, 10 June 2022
Dtiprep
[[Category:Software]][[Category:Phylogenetics]]

2 KB (290 words) - 21:50, 27 August 2020
Hapbin
[[Category:Software]]

3 KB (292 words) - 18:12, 15 August 2022
Poretools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (240 words) - 18:50, 21 August 2022
MstatX
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (288 words) - 21:22, 6 December 2019
Falco
[[Category:Software]] Falco is a program emulation of the popular FastQC software to check large sequencing reads for common problems.

2 KB (283 words) - 14:11, 21 October 2022
MOCCASIN
[[Category:Software]][[Category:Phylogenetics]]

2 KB (287 words) - 18:59, 31 May 2022
Cluster3
[[Category:Software]][[Category:Biology]][[Category:Genomics]] The open source clustering software available here implement the most commonly used clustering methods for gene

2 KB (274 words) - 18:37, 12 August 2022
HUMAnN
[[Category:Software]][[Category:Sequencing]][[Category:Biology]]

3 KB (327 words) - 14:26, 11 October 2022
PGDSpider
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://www.cmpg.unibe.ch/software/PGDSpider/}}

3 KB (387 words) - 19:04, 10 June 2022
MEGASAT
[[Category:Software]][[Category:Phylogenetics]] MEGASAT is a software tool that can automatically infer genotypes from high-throughput microsatel

2 KB (278 words) - 13:22, 28 August 2020
Tiara
[[Category:Software]][[Category:Phylogenetics]]

2 KB (272 words) - 16:36, 22 August 2022
Xwalk
[[Category:Software]]

3 KB (345 words) - 16:47, 28 February 2023
HAPLOSWEEP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (260 words) - 21:20, 6 December 2019
TURBOMOLE
[[Category:Software]][[Category:Chemistry]] TURBOMOLE is a licensed software. To use it, please provide your license. We will set the file permissions a

3 KB (369 words) - 17:42, 15 August 2022
Example
[[Category:Software]] The software foobarbaz is a really wonderful tool that lets you tie your shoelaces remot

3 KB (370 words) - 02:39, 24 May 2023
SeqMap
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

3 KB (373 words) - 22:35, 21 August 2022
SWIG
[[Category:Software]][[Category:library]][[Category:Programming]][[Category:Compiler]] ...ort its parse tree in the form of XML and Lisp s-expressions. SWIG is free software and the code that SWIG generates is compatible with both commercial and non

3 KB (414 words) - 20:04, 21 August 2022
Powerfit
[[Category:Software]][[Category:Physics]]

3 KB (318 words) - 21:24, 7 March 2023
MetaPhysicl
[[Category:Software]][[Category:Math]][[Category:Astronomy]][[Category:Simulation]]

2 KB (247 words) - 19:28, 18 August 2022
RGAugury
[[Category:Software]][[Category:Sequencing]][[Category:Biology]]

3 KB (354 words) - 21:29, 30 November 2023
SHEsisPlus
[[Category:Software]][[Category:Biology]][[Category:Genomics]] SHEsisPlus is a a software package for analysis of genetic association, Hardy-weinberg equilibrium, li

3 KB (344 words) - 15:04, 19 August 2022
Paralyzer
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://ohlerlab.mdc-berlin.de/software/PARalyzer_85/}}

3 KB (352 words) - 18:19, 27 May 2022
Slurm
[[Category:Software]][[Category:Scheduler]] ...a fair chance of using the resources without interfering with each other. Software called a resource manager and a scheduler are required to fulfill the above

5 KB (763 words) - 17:37, 5 March 2024
Category:Interface
[[Category:Software]]

2 members (2 subcategories, 0 files) - 18:02, 26 September 2022
METAL
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

3 KB (426 words) - 19:27, 18 August 2022
Redis
[[Category:Software]][[Category:Data Science]][[Category:Database]]

2 KB (267 words) - 21:39, 21 August 2022
TreeMix
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (356 words) - 17:56, 10 June 2022
PyVista
[[Category:Software]][[Category:Phylogenetics]]

3 KB (344 words) - 13:56, 25 September 2020
Quantisnp
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (297 words) - 20:29, 12 August 2022
DeepTools
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (360 words) - 14:35, 15 August 2022
Ubuntu
[[Category:Software]][[Category:Linux]] Ubuntu is an open source software operating system that runs from the desktop, to the cloud, to all your inte

3 KB (321 words) - 19:57, 14 February 2024
Qcat
[[Category:Software]][[Category:Phylogenetics]]

3 KB (306 words) - 16:17, 23 January 2020
Viralmsa
[[Category:Software]][[Category:Phylogenetics]]

3 KB (357 words) - 19:56, 27 May 2022
Wine
[[Category:Software]][[Category:Linux]][[Category:Utility]]

3 KB (367 words) - 17:43, 22 August 2022
Coreutils
[[Category:Software]][[Category:Utility]] |{{#vardefine:url|https://www.gnu.org/software/coreutils/}}

2 KB (301 words) - 14:09, 15 August 2022
CGAL
[[Category:Software]][[Category:Library]][[Category:Math]]

2 KB (293 words) - 15:32, 6 June 2022
Protege
[[Category:Software]][[Category:Genomics]]

2 KB (232 words) - 20:19, 24 August 2022
How To ResVault
The full documentation for tiCrypt software can be found at [https://ticrypt.com/docs/frontend2/getting-started tiCrypt # Run the installer software for the tiCrypt Connect client and follow the prompts.

6 KB (953 words) - 20:01, 18 July 2023
SURVIVOR
[[Category:Software]][[Category:Phylogenetics]]

3 KB (296 words) - 21:24, 6 December 2019
Slamdunk
[[Category:Software]][[Category:Phylogenetics]] SlamDunk is a novel, fully automated software tool for automated, robust, scalable and reproducible SLAMseq data analysis

3 KB (294 words) - 20:55, 27 May 2022
Category:Data
[[Category:Software]]

12 members (5 subcategories, 0 files) - 20:50, 2 June 2022
Trimmomatic
[[Category:Software]][[Category:Biology]][[Category:NGS]]

4 KB (522 words) - 20:52, 12 August 2022
TransDecoder
[[Category:Software]][[Category:Biology]][[Category:NGS]] A log-likelihood score similar to what is computed by the GeneID software is > 0.

3 KB (371 words) - 16:54, 22 August 2022
Phylonet
[[Category:Software]][[Category:biology]][[Category:phylogenetics]] C. Than, D. Ruths, L. Nakhleh (2008) PhyloNet: A software package for analyzing and reconstructing reticulate evolutionary histories,

2 KB (263 words) - 21:23, 6 December 2019
PennCNV
[[Category:Software]][[Category:Phylogenetics]] PennCNV is a free software tool for Copy Number Variation (CNV) detection from SNP genotyping arrays.

4 KB (474 words) - 21:23, 6 December 2019
Rclone
[[Category:Software]][[Category:Web]]

6 KB (763 words) - 20:07, 30 October 2023
Trilinos
[[Category:Software]][[Category:Math]] |{{#vardefine:exe|}} 

2 KB (294 words) - 15:23, 19 August 2022
Hardware Accelerated GUI Sessions
[[Category:Software]] ==Launching Hardware (HW) Accelerated GUI software==

342 bytes (45 words) - 13:18, 12 April 2023
Dsistudio
[[Category:Software]][[Category:Machine Learning]] DSI Studio is a tractography software tool that maps brain connections and correlates findings with neuropsycholo

2 KB (277 words) - 20:10, 23 May 2022
Conda
[[Category:Software]][[Category:Programming]]

16 KB (2,392 words) - 20:14, 16 April 2024
V-pipe
[[Category:Software]]

3 KB (296 words) - 17:20, 22 August 2022
Rvtests
[[Category:Software]][[Category:Sequencing]][[Category:Genomics]][[Category:Biology]] Rvtests, which stands for Rare Variant tests, is a flexible software package for genetic association analysis for sequence datasets.

3 KB (293 words) - 21:59, 21 August 2022
NetCDF-C
[[Category:Software]][[Category:Data Science]] |{{#vardefine:url|https://www.unidata.ucar.edu/software/netcdf/}}

2 KB (278 words) - 14:47, 19 August 2022
MTG2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (310 words) - 21:21, 6 December 2019
ALLPATHS-LG
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://www.broadinstitute.org/software/allpaths-lg/blog/}}

2 KB (299 words) - 12:36, 12 August 2022
Scalablast
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://omics.pnl.gov/software/ScalaBLAST.php}}

3 KB (318 words) - 20:34, 12 August 2022
MPACK
[[Category:Software]][[Category:Library]]

3 KB (307 words) - 17:03, 10 June 2022
UCX
[[Category:Software]][[Category:Programming]][[Category:Programming]][[Category:Library]]

2 KB (244 words) - 12:02, 26 August 2022
R-index
[[Category:Software]][[Category:Phylogenetics]]

3 KB (319 words) - 21:24, 6 December 2019
Blast2GO
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

6 KB (920 words) - 14:08, 16 March 2023
PAUP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] PAUP is a software package for inference of evolutionary trees.

2 KB (249 words) - 20:15, 12 August 2022
ZEO++
[[Category:Software]][[Category:Chemistry]] Zeo++ is a open source software for performing high-throughput geometry-based analysis of porous materials

3 KB (424 words) - 19:47, 27 May 2022
Eukulele
[[Category:Software]][[Category:Alignment]][[Category:Annotation]][[Category:Biology]][[Categor The software includes four major features:

4 KB (453 words) - 22:12, 8 March 2024
FSL
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]]

3 KB (365 words) - 16:47, 17 January 2023
COLMAP
[[Category:Software]][[Category:Modeling]] ...eatures for reconstruction of ordered and unordered image collections. The software is licensed under the new BSD license. If you use this project for your res

2 KB (290 words) - 16:53, 6 June 2022
Matt
[[Category:Software]]

2 KB (257 words) - 21:03, 6 April 2023
Transrate
[[Category:Software]][[Category:Biology]][[Category:Assembly]] Transrate is software for de-novo transcriptome assembly quality analysis. It examines your assem

3 KB (316 words) - 16:54, 22 August 2022
MCL
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

3 KB (372 words) - 18:28, 18 August 2022
Quickmerge
[[Category:Software]][[Category:Phylogenetics]]

3 KB (325 words) - 21:24, 6 December 2019
MITE-Hunter
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (250 words) - 15:05, 10 June 2022
Kraken
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://ccb.jhu.edu/software/kraken/}}

4 KB (483 words) - 19:28, 12 August 2022
CUBE
[[Category:Software]][[Category:Library]][[Category:Math]][[Category:Compiler]] |{{#vardefine:url|http://www.scalasca.org/software/cube-4.x}}

3 KB (329 words) - 14:14, 15 August 2022
CONSEL
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (375 words) - 18:43, 10 June 2022
FMRIPrep
[[Category:Software]][[Category:Data Mining]]

2 KB (288 words) - 16:47, 17 October 2023
Amrfinderplus
[[Category:Software]][[Category:Phylogenetics]]

4 KB (447 words) - 15:59, 27 May 2022
Seq-Gen
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://tree.bio.ed.ac.uk/software/seqgen/}}

3 KB (351 words) - 17:58, 10 June 2022
Panaroo
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (289 words) - 19:33, 13 June 2023
Category:Language
[[Category:Software]]

22 members (0 subcategories, 0 files) - 15:37, 3 June 2022
SOAPdenovo-Trans
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (283 words) - 00:05, 22 August 2022
ASPECT
[[Category:Software]][[Category:Library]]

2 KB (285 words) - 15:16, 3 June 2022
VAMPIR
[[Category:Software]][[Category:Performance Analysis]]

3 KB (321 words) - 17:22, 22 August 2022
FALCON fc large run cfg
[[Category:Software]]

2 KB (266 words) - 20:30, 2 August 2021
LAPACK
[[Category:Software]][[Category:Library]][[Category:Programming]][[Category:Compiler]] LAPACK is a standard software library for numerical linear algebra. It provides routines for solving syst

2 KB (286 words) - 17:43, 15 August 2022
Ezaai
[[Category:Software]][[Category:biology]][[Category:Phylogenetics]]

2 KB (282 words) - 15:13, 15 August 2022
Tapir
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (275 words) - 16:40, 10 June 2022
Coot
[[Category:Software]][[Category:Modeling]]

3 KB (300 words) - 21:17, 6 December 2019
Torch-geometric
[[Category:Software]][[Category:Phylogenetics]]

2 KB (241 words) - 19:43, 1 June 2022
Resistify
[[Category:Software]]

2 KB (264 words) - 16:44, 6 February 2024
LCModel
[[Category:Software]] ...maintenance for LCModel. It's recommended that users install and run this software locally by following instructions posted at http://s-provencher.com/lcm-tes

4 KB (497 words) - 16:28, 15 December 2022
Slurm-drmaa
[[Category:Software]][[Category:library]][[Category:Scheduler Apps]][[Category:Programming]] ..., portal developers and ISVs can use the same high-level API to link their software with different cluster/resource management systems.

3 KB (316 words) - 14:30, 11 July 2023
DealII
[[Category:Software]][[Category:Library]]

2 KB (250 words) - 19:56, 13 June 2022
Mpinterfaces
[[Category:Software]][[Category:Math]]

2 KB (279 words) - 12:27, 19 August 2022
Popcorn
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (260 words) - 18:49, 21 August 2022
SOAPec
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (322 words) - 17:14, 10 June 2022
Platanus
[[Category:Software]][[Category:Phylogenetics]]

3 KB (318 words) - 21:23, 6 December 2019
Openstructure
[[Category:Software]][[Category:Biology]] If you like our software and have used it in your research project, please cite the following paper

3 KB (403 words) - 23:35, 6 February 2023
LAMMPS
[[Category:Software]][[Category:Molecular Dynamics]] |{{#vardefine:exe|1}} 

5 KB (731 words) - 20:30, 6 April 2024
MODELTEST
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (277 words) - 16:18, 10 June 2022
Protobuf
[[Category:Software]][[Category:web]][[Category:library]]

2 KB (280 words) - 18:02, 15 August 2022
Annotated SLURM Script
* Load the software you need

3 KB (502 words) - 14:13, 27 October 2023
Cvbio
[[Category:Software]][[Category:Phylogenetics]]

3 KB (305 words) - 13:11, 21 October 2020
Pychopper
[[Category:Software]][[Category:Phylogenetics]][[Category:Sequencing]]

2 KB (262 words) - 18:12, 27 July 2022
Saffrontree
[[Category:Software]][[Category:Phylogenetics]]

3 KB (400 words) - 17:17, 31 May 2022
Spyder
[[Category:Software]][[Category:Programming]]

3 KB (350 words) - 18:56, 21 August 2022
Svim
[[Category:Software]][[Category:Biology]]

3 KB (358 words) - 17:14, 31 May 2022
JModelTest
[[Category:Software]][[Category:Genomics]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (431 words) - 19:27, 12 August 2022
MOTU
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://www.bork.embl.de/software/mOTU/}}

3 KB (328 words) - 12:00, 19 August 2022
Epoch
[[Category:Software]][[Category:Astronomy]]

2 KB (250 words) - 13:13, 6 June 2022
Viromescan
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (236 words) - 18:36, 24 March 2023
BPP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://abacus.gene.ucl.ac.uk/software.html}}

2 KB (294 words) - 18:21, 12 August 2022
Pharmcat
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (288 words) - 20:19, 12 August 2022
MitoPhAST
[[Category:Software]][[Category:Phylogenetics]]

3 KB (382 words) - 14:27, 23 April 2020
Imaginaire
[[Category:Software]]

3 KB (302 words) - 17:55, 15 August 2022
Pymesh
[[Category:Software]]

2 KB (271 words) - 16:09, 9 March 2023
FastStructure
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (297 words) - 18:54, 12 August 2022
PacBio
[[Category:Software]][[Category:biology]][[Category:NGS]][[Category:Workflow Automation]] |{{#vardefine:url|https://www.pacb.com/products-and-services/analytical-software/devnet/}}

2 KB (250 words) - 20:10, 24 August 2022
CellRanger-DNA
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]][[Category:Genomic |{{#vardefine:url|https://support.10xgenomics.com/single-cell-dna/software/pipelines/latest/what-is-cell-ranger-dna}}

2 KB (263 words) - 13:25, 15 August 2022
BppSuite
[[Category:Software]][[Category:Genomics]]

2 KB (248 words) - 15:37, 9 December 2022
Esmf
[[Category:Software]][[Category:geospatial]] The Earth System Modeling Framework (ESMF) is a suite of software tools for developing high-performance, multi-component Earth science modeli

2 KB (256 words) - 20:59, 22 September 2022
VTC
[[Category:Software]][[Category:Biology]]

3 KB (364 words) - 20:55, 12 August 2022
MolProbity
[[Category:Software]][[Category:Biology]][[Category:Chemistry]]

2 KB (248 words) - 16:44, 30 January 2023
UFRC Help and Documentation
| style="width: 7%; vertical-align: top" | [[Image:Software.png|frameless|upright=0.2]] ...padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">SOFTWARE AND REFERENCE DATA</h1>

5 KB (656 words) - 14:10, 19 March 2024
OpenNeuro
[[Category:Software]][[Category:Data Science]][[Category:Biology]]

2 KB (248 words) - 17:56, 19 August 2022
Delineate
[[Category:Software]]

3 KB (303 words) - 20:46, 18 May 2021
Sim4
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (302 words) - 20:41, 12 August 2022
Compacta
[[Category:Software]] Compacta is a software designed to reduce the number of contigs given by

3 KB (294 words) - 13:52, 15 August 2022
SSM
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 13:48, 10 June 2021
GAML
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (279 words) - 16:51, 15 August 2022
Infernal
[[Category:Software]][[Category:Biology]][[Category:Alignment‏]]

3 KB (305 words) - 19:31, 24 August 2022
Lucene
[[Category:Software]][[Category:Programming]][[Category:Search]]

2 KB (262 words) - 12:11, 26 August 2022
PASA
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] |{{#vardefine:exe|1}} 

4 KB (687 words) - 21:04, 4 January 2023
Category:Spectroscopy
[[Category:Biology]][[Category:Software]]

7 members (0 subcategories, 0 files) - 15:29, 23 August 2022
Wise
[[Category:Software]][[Category:biology]][[Category:genomics]]

3 KB (321 words) - 21:29, 6 December 2019
Pypaftol
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]]

3 KB (307 words) - 14:11, 9 April 2024
Barrnap
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]] |{{#vardefine:url|http://www.vicbioinformatics.com/software.barrnap.shtml}}

3 KB (328 words) - 17:55, 10 June 2022
DeepGS
[[Category:Software]][[Category:Phylogenetics]]

3 KB (342 words) - 22:21, 26 August 2020
Monai
[[Category:Software]][[Category:Healthcare]]

6 KB (884 words) - 17:46, 5 May 2023
REDItools2
[[Category:Software]][[Category:Phylogenetics]]

2 KB (237 words) - 18:05, 1 June 2022
MetaBAT
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (258 words) - 21:21, 6 December 2019
Sine scan
[[Category:Software]][[Category:Phylogenetics]]

2 KB (241 words) - 18:28, 1 June 2022
Platon
[[Category:Software]] <code>Robertson J., Nash J. H. E. (2018) MOB-suite: Software Tools for Clustering, Reconstruction and Typing of Plasmids From Draft Asse

4 KB (437 words) - 17:14, 14 December 2022
Lumpy
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (235 words) - 19:46, 12 August 2022
Category:Web
[[Category:Software]]

11 members (1 subcategory, 0 files) - 19:51, 22 August 2022
SEQPower
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Phylogenetics]]

2 KB (274 words) - 22:38, 21 August 2022
Graftm
[[Category:Software]][[Category:Phylogenetics]]

3 KB (322 words) - 22:16, 27 August 2020
Csvtk
[[Category:Software]][[Category:Biology]]

2 KB (260 words) - 18:44, 12 August 2022
GRIDSS
[[Category:Software]][[Category:Phylogenetics]] GRIDSS is a module software suite containing tools useful for the detection of genomic rearrangements.

3 KB (388 words) - 21:20, 6 December 2019
TEtools
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (257 words) - 21:29, 6 December 2019
Segment-liftover
[[Category:Software]]

2 KB (251 words) - 20:38, 12 August 2022
SIFT
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (303 words) - 20:40, 12 August 2022
VTK
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] he Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK co

3 KB (360 words) - 20:55, 12 August 2022
Theano
[[Category:Software]][[Category:Library]][[Category:Math]][[Category:GPU]] |{{#vardefine:url|http://www.deeplearning.net/software/theano/}}

3 KB (345 words) - 15:58, 6 June 2022
Bam-Readcount
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (258 words) - 15:11, 10 June 2022
Mamba
[[Category:Software]]

3 KB (429 words) - 20:16, 3 June 2022
Metashape
[[Category:Software]] Agisoft Metashape is a stand-alone software product that performs photogrammetric processing of digital images and gene

2 KB (280 words) - 15:35, 14 March 2023
PRICE
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://derisilab.ucsf.edu/software/price/}}

2 KB (286 words) - 16:26, 10 June 2022
SMARTdenovo
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (296 words) - 21:24, 6 December 2019
Sampledock
[[Category:Software]][[Category:Machine Learning]][[Category:Molecular Dynamics]]

2 KB (253 words) - 17:59, 15 August 2022
WDSSII
[[Category:Software]][[Category:Climate]] |{{#vardefine:exe|}} 

2 KB (299 words) - 20:05, 24 August 2022
HTMLDoc
[[Category:Software]][[Category:Documentation]][[Category:Web]]

2 KB (253 words) - 18:34, 15 August 2022
Sate
[[Category:Software]][[Category:biology]][[Category:phylogenetics]] |{{#vardefine:url|http://phylo.bio.ku.edu/software/sate/sate.html}}

7 KB (910 words) - 20:43, 21 December 2022
Quake
[[Category:Software]][[Category:Biology]][[Category:Sequencing]] |{{#vardefine:url|http://www.cbcb.umd.edu/software/quake/}}

3 KB (367 words) - 18:50, 10 June 2022
Aria2
[[Category:Software]][[Category:Utility]]

3 KB (326 words) - 14:05, 17 September 2020
GenomeScope2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (308 words) - 22:07, 15 March 2022
CLUMPP
[[Category:Software]][[Category:Biology]] You must have configuration files to be able to run this software. The example configuration file can be copied using the following command:

3 KB (351 words) - 18:33, 12 August 2022
Pbrt
[[Category:Software]][[Category:Phylogenetics]]

2 KB (259 words) - 18:20, 27 May 2022
Gerbil
[[Category:Software]][[Category:Phylogenetics]] ...hat is specialized for high effiency when counting k-mers for large k. The software is decribed here.

3 KB (320 words) - 14:34, 3 January 2020
CDBFasta
[[Category:Software]][[Category:Phylogenetics]]

3 KB (309 words) - 15:35, 2 December 2020
CGATools
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (291 words) - 13:26, 15 August 2022
SNeP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] SNeP is a piece of software written in C++ that performs historical Effective Population Size (Ne) traj

2 KB (278 words) - 16:23, 10 June 2022
BIOM
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (272 words) - 21:02, 6 December 2019
Xlsx2csv
[[Category:Software]]

2 KB (241 words) - 20:08, 24 October 2022
Pggb
[[Category:Software]][[Category:Phylogenetics]]

2 KB (287 words) - 19:56, 6 November 2020
Sniffles2
[[Category:Software]]

2 KB (291 words) - 20:42, 12 August 2022
Fgbio
[[Category:Software]][[Category:Phylogenetics]]

2 KB (292 words) - 21:20, 6 December 2019
PSMC
[[Category:Software]][[Category:Phylogenetics]] This software package infers population size history from a diploid sequence

2 KB (263 words) - 14:01, 28 February 2020
KofamScan
[[Category:Software]][[Category:Phylogenetics]]

2 KB (260 words) - 13:48, 26 February 2021
MGEScan
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (299 words) - 16:58, 10 June 2022
Prokka
[[Category:Software]][[Category:Biology]][[Category:Assembly]][[Category:Genomics]] |{{#vardefine:url|http://www.vicbioinformatics.com/software.prokka.shtml}}

2 KB (297 words) - 19:41, 21 August 2022
FRAMA
[[Category:Software]][[Category:biology]]

2 KB (236 words) - 21:21, 6 December 2019
Blast
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (402 words) - 18:17, 12 August 2022
AMOS
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Assembly]] ...mbly infrastructure. In this sense, AMOS is both a design philosophy and a software system.

3 KB (344 words) - 12:41, 12 August 2022
Bwa-mem2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (361 words) - 16:11, 27 May 2022
Rapidtide
[[Category:Software]][[Category:Phylogenetics]]

2 KB (281 words) - 13:58, 7 May 2020
CNCI
[[Category:Software]][[Category:Phylogenetics]]

3 KB (374 words) - 14:09, 23 April 2021
YASM
[[Category:Software]][[Category:Programming]]

2 KB (292 words) - 17:53, 22 August 2022
Get homologues
[[Category:Software]][[Category:Biology]][[Category:Genomics]] An open-source software package that builds on popular orthology-calling approaches making highly c

3 KB (306 words) - 21:20, 6 December 2019
Disbatch
[[Category:Software]]

2 KB (246 words) - 15:19, 18 July 2023
ABySS
[[Category:Software]][[Category:Biology]][[Category:De Novo]] |{{#vardefine:url|http://www.bcgsc.ca/platform/bioinfo/software/abyss}}

2 KB (315 words) - 16:17, 19 August 2022
LS-DYNA
[[Category:Software]][[Category:Physics]]

3 KB (394 words) - 20:13, 15 August 2022
CMS
[[Category:Software]][[Category:Biology]]

3 KB (317 words) - 21:02, 6 December 2019
Apptests
[[Category:Software]]

3 KB (331 words) - 20:52, 1 November 2023
ARPACK
[[Category:Software]][[Category:Math]] |{{#vardefine:url|http://www.caam.rice.edu/software/ARPACK/}}

2 KB (255 words) - 14:42, 12 August 2022
PosiGene
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (358 words) - 21:22, 6 December 2019
Pbpigeon
[[Category:Software]][Category:Biology]]

2 KB (275 words) - 22:37, 21 January 2024
DALIGNER
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (238 words) - 14:28, 15 August 2022
Blackfynn
[[Category:Software]][[Category:Data Mining]]

2 KB (280 words) - 19:12, 27 May 2022
Freecad
[[Category:Software]][[Category:Modeling]]

2 KB (241 words) - 00:16, 15 February 2023
GCTA
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Variant Calling]] |{{#vardefine:url|http://cnsgenomics.com/software/gcta/index.html}}

3 KB (331 words) - 12:56, 15 August 2022
MPFR
[[Category:Software]][[Category:Library]][[Category:Math]]

2 KB (302 words) - 21:22, 6 December 2019
SUMO
[[Category:Software]][[Category:Phylogenetics]]

2 KB (275 words) - 21:24, 6 December 2019
Sim4Life
[[Category:Software]][[Category:Biology]][[Category:Simulation]]

2 KB (271 words) - 18:20, 1 June 2022
GapFiller
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (331 words) - 16:52, 15 August 2022
Popoolation
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (321 words) - 21:23, 6 December 2019
BUSCO
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

5 KB (607 words) - 19:38, 27 March 2023
ELPA
[[Category:Software]][[Category:Math]][[Category:Library]][[Category:Compiler]]

2 KB (290 words) - 14:58, 15 August 2022
GLMsingle
[[Category:Software]][[Category:imaging]]

2 KB (291 words) - 20:33, 24 August 2022
Meraculous
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (354 words) - 18:36, 10 June 2022
OCOCO
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (284 words) - 21:22, 6 December 2019
Caper
[[Category:Software]][[Category:Data_Science]]

3 KB (425 words) - 14:43, 11 October 2023
MCNPX
[[Category:Software]][[Category:Physics]]

2 KB (221 words) - 18:28, 18 August 2022
VarScan
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...nts a substantial informatics challenge. VarScan is a platform-independent software tool developed at the Genome Institute at Washington University to detect v

3 KB (324 words) - 20:54, 12 August 2022
BEAR
[[Category:Software]][[Category:Biology]][[Category:genomics]]

2 KB (274 words) - 18:13, 12 August 2022
Flye
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (317 words) - 21:20, 6 December 2019
SimNIBS
[[Category:Software]][[Category:Phylogenetics]] SimNIBS is a free and open source software package for the Simulation of Non-invasive Brain Stimulation. It allows for

3 KB (324 words) - 18:04, 28 August 2020
SQANTI3
[[Category:Software]][[Category:Phylogenetics]]

2 KB (290 words) - 20:35, 27 May 2022
Ngsremix
[[Category:Software]]

2 KB (259 words) - 21:49, 28 February 2023
Scipion
[[Category:Software]][[Category:Image Processing]] ...ts and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all step

2 KB (289 words) - 21:24, 6 December 2019
LIBXSMM
[[Category:Software]][[Category:Library]][[Category:Compiler]][[Category:Math]]

2 KB (257 words) - 17:46, 15 August 2022
Category:Graphics
[[Category:Software]]

13 members (0 subcategories, 0 files) - 18:46, 10 August 2012
ChartDirector
[[Category:Software]][[Category:Data Science]][[Category:Library]]

3 KB (397 words) - 13:26, 15 August 2022
Ssr pipeline
[[Category:Software]][[Category:biology]][[Category:Sequencing]] ...hon installed on their computers or who do not have the ability to compile software also may choose to download packaged executable files. These files include

4 KB (501 words) - 18:55, 6 June 2022
PBGCpp
[[Category:Software]][[Category:Phylogenetics]]

2 KB (229 words) - 20:05, 31 May 2022
MetaWRAP
[[Category:Software]][[Category:Phylogenetics]] ...lexible pipeline for genome-resolved metagenomic data analysis. If certain software wrapped into metaWRAP were integral to your investigation (e.g. Salmon, Max

3 KB (412 words) - 22:31, 8 September 2020
Triobinning
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

2 KB (276 words) - 13:31, 15 August 2022
EMC
[[Category:Software]][[Category:Simulation]]

2 KB (241 words) - 15:04, 15 August 2022
Genomic-fluidity
[[Category:Software]][[Category:Phylogenetics]]

2 KB (282 words) - 21:21, 6 December 2019
Rapidsai
[[Category:Software]][[Category:Data Science]] The RAPIDS suite of open source software libraries and APIs gives you the ability to execute end-to-end data science

3 KB (348 words) - 21:29, 21 August 2022
Amuse
[[Category:Software]][[Category:Astronomy]] AMUSE is an Astrophysical Multipurpose Software Environment. Within AMUSE different existing numerical codes are incorporat

2 KB (287 words) - 20:34, 15 August 2022
MMSEQ
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (387 words) - 20:50, 18 August 2022
Recon
[[Category:Software]][[Category:Biology]][[Category:Sequencing]] |{{#vardefine:url|http://eddylab.org/software/recon/}}

2 KB (260 words) - 21:38, 21 August 2022
BoltzTraP
[[Category:Software]][[Category:Physics]]

2 KB (279 words) - 16:19, 10 June 2022
Assemblytics
[[Category:Software]][[Category:Phylogenetics]]

2 KB (252 words) - 17:02, 29 September 2020
Cx oracle
[[Category:Software]][[Category:Database]][[Category:Utility]]

2 KB (269 words) - 14:22, 15 August 2022
REPdenovo
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (327 words) - 21:43, 21 August 2022
TEMP
[[Category:Software]][[Category:Phylogenetics]] TEMP is a software package for detecting transposable elements (TEs) insertions and absences f

2 KB (270 words) - 21:29, 6 December 2019
Brewery
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 17:40, 24 January 2020
MeShClust
[[Category:Software]][[Category:Biology]]

2 KB (244 words) - 20:44, 27 January 2021
CASAVA
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://www.illumina.com/software/genome_analyzer_software.ilmn}}

3 KB (340 words) - 18:23, 12 August 2022
RSEM
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data

3 KB (390 words) - 21:59, 21 August 2022
DCC
[[Category:Software]][[Category:biology]][[Category:NGS]]

2 KB (236 words) - 18:45, 12 August 2022
EMBOSS
[[Category:Software]][[Category:Biology]] ...to a seamless whole. EMBOSS breaks the historical trend towards commercial software packages.

3 KB (372 words) - 15:01, 15 August 2022
Mdanalysis
[[Category:Software]][[Category:Biology]][[Category:Physics]]

3 KB (387 words) - 19:49, 12 August 2022
Counterr
[[Category:Software]][[Category:Phylogenetics]]

3 KB (342 words) - 21:15, 6 December 2019
Elastix
[[Category:Software]][[Category:Phylogenetics]] ...on the well-known Insight Segmentation and Registration Toolkit (ITK). The software consists of a collection of algorithms that are commonly used to solve (med

3 KB (365 words) - 15:30, 3 June 2022
Face morpher
[[Category:Software]][[Category:Phylogenetics]]

2 KB (264 words) - 15:18, 15 August 2022
ANNOVAR
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

4 KB (545 words) - 14:16, 12 August 2022
VEP
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (270 words) - 17:28, 22 August 2022
Program Database Toolkit
[[Category:Software]][[Category:Language]][[Category:Programming]][[Category:Performance Analys uniform way through a class library supporting common PDB operations. Software

3 KB (370 words) - 14:38, 18 October 2022
PanX
[[Category:Software]][[Category:Phylogenetics]] panX is a software package for pan-genome analysis, interactive visualization and exploration.

3 KB (346 words) - 21:22, 6 December 2019
Add New App Page
...app module name e.g. "foo" into the text box and click on the "Create new software page" button. Edit the resulting page as necessary.

245 bytes (44 words) - 17:34, 3 June 2022
Mercurial
[[Category:Software]][[Category:Revision Control]]

2 KB (253 words) - 19:59, 10 June 2022
Gimmemotifs
[[Category:Software]]

2 KB (293 words) - 15:41, 30 June 2023
EvoLSTM
[[Category:Software]][[Category:Biology]]

3 KB (309 words) - 18:52, 12 August 2022
Graph-tool
[[Category:Software]][[Category:Phylogenetics]]

2 KB (285 words) - 17:20, 15 August 2022
HMMRATAC
[[Category:Software]][[Category:Phylogenetics]]

2 KB (268 words) - 14:22, 7 May 2021
MEGAN
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://ab.inf.uni-tuebingen.de/software/megan6/}}

3 KB (338 words) - 15:38, 15 April 2024
Neovim
[[Category:Software]][[Category:Programming]][[Category:Shell]][[Category:Utility]]

3 KB (327 words) - 20:24, 2 February 2024
SQANTI
[[Category:Software]][[Category:Phylogenetics]]

3 KB (321 words) - 21:24, 6 December 2019
Structure
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

2 KB (325 words) - 16:03, 22 August 2022
DiffReps
[[Category:Software]][[Category:Biology]]

4 KB (474 words) - 14:41, 15 August 2022
HPL
[[Category:Software]][[Category:Programming]][[Category:Performance Analysis]]

2 KB (255 words) - 12:01, 26 August 2022
MitoFinder
[[Category:Software]][[Category:Phylogenetics]]

2 KB (255 words) - 21:23, 6 December 2019
Perl
[[Category:Software]][[Category:Language]][[Category:Programming]] |{{#vardefine:exe|1}} 

5 KB (811 words) - 17:56, 2 January 2023
SHAPE-MaP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://www.chem.unc.edu/rna/software.html}}

3 KB (325 words) - 17:25, 10 June 2022
YASRA
[[Category:Software]] [[Category:biology]][[Category:NGS]][[Category:sequencing]]

3 KB (304 words) - 20:56, 12 August 2022
Hiphase
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (337 words) - 20:21, 19 March 2024
FastUniq
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (301 words) - 16:37, 15 August 2022
COMSOL
[[Category:Software]][[Category:Simulation]] COMSOL Multiphysics® is a general-purpose simulation software for modeling designs, devices, and processes in all fields of engineering,

3 KB (426 words) - 19:40, 20 February 2024
Fastchaos
[[Category:Software]][[Category:Sequencing]]

2 KB (243 words) - 14:57, 29 July 2022
Julia
[[Category:Software]][[Category:Language]][[Category:Programming]][[Category:Statistics]]

3 KB (412 words) - 20:49, 21 October 2022
MCR
[[Category:Software]][[Category:Math]][[Category:Language]] ...TLAB Runtime enable you to create and distribute numerical applications or software components quickly and securely.

2 KB (292 words) - 18:06, 3 June 2022
ASHS
[[Category:Software]][[Category:Biology]][[Category:imaging]] ASHS is a software package for automatic segmentation of hippocampal subfields in MRI scans. A

3 KB (353 words) - 20:32, 24 August 2022
QRNA
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|http://eddylab.org/software/qrna/}}

2 KB (251 words) - 17:39, 1 June 2022
Shustring
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (237 words) - 14:55, 10 June 2022
Gapseq
[[Category:Software]][[Category:Chemistry]][[Category:Biology]]

2 KB (252 words) - 14:22, 11 October 2022
SAS
[[Category:Software]][[Category:Statistics]][[Category:Data Science]] |{{#vardefine:exe|1}} 

5 KB (775 words) - 13:48, 15 September 2023
GCT
[[Category:Software]][[Category:File Management]][[Category:Utility]] The GCT is a nascent effort to provide community-based support for critical software packages for grid computing. The GCT is based on a fork of the Globus Toolk

2 KB (290 words) - 13:54, 21 October 2022
IVA
[[Category:Software]][[Category:Phylogenetics]]

2 KB (300 words) - 16:06, 7 December 2021
Package-GFE
[[Category:Software]][[Category:Biology]][[Category:Genomics]] This software package is for estimating allele and genotype frequencies from nucleotide r

2 KB (280 words) - 16:45, 10 June 2022
Mega2
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (310 words) - 21:21, 6 December 2019
Fusion twas
[[Category:Software]][[Category:Phylogenetics]]

2 KB (257 words) - 19:27, 26 May 2022
Training
===Intel Software Tools Technical Webinar Series=== ...n information is available [http://software.intel.com/en-us/articles/intel-software-tools-technical-webinar-series here].

3 KB (484 words) - 13:21, 10 January 2023
MKL
[[Category:Software]][[Category:Library]][[Category:Math]][[Category:Programming]][[Category:Co |{{#vardefine:url|https://software.intel.com/en-us/mkl}}

3 KB (378 words) - 19:14, 24 August 2022
Valouev
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (252 words) - 21:29, 6 December 2019
Category:Sequencing
Sequencing Software on HiPerGator [[Category:Software]][[Category:Research]]

146 members (0 subcategories, 0 files) - 21:43, 24 October 2022
Wub
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] Tools and software library developed by the ONT Applications group

2 KB (250 words) - 17:46, 22 August 2022
SHAPEIT4
[[Category:Software]]

5 KB (617 words) - 19:22, 14 December 2022
Platypus
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (435 words) - 19:21, 10 June 2022
MinPath
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (317 words) - 21:22, 6 December 2019
Workbench
[[Category:Software]][[Category:Fluid Dynamics]]

2 KB (286 words) - 15:34, 19 August 2022
Krona
[[Category:Software]][[Category:Biology]]

2 KB (254 words) - 19:29, 12 August 2022
Nanodisco
[[Category:Software]][[Category:Phylogenetics]]

3 KB (326 words) - 14:37, 27 August 2021
MNEtools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (238 words) - 16:13, 6 June 2022
BUCKy
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (386 words) - 13:15, 15 August 2022
MRIcroGL
[[Category:Software]][[Category:Biology]][[Category:Imaging]]

2 KB (294 words) - 20:33, 24 August 2022
Metabolic
[[Category:Software]] This software enables the prediction of metabolic and biogeochemical functional trait pro

3 KB (304 words) - 19:26, 18 August 2022
BayeScan
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]] |{{#vardefine:url|http://cmpg.unibe.ch/software/BayeScan/index.html}}

3 KB (402 words) - 18:10, 12 August 2022
BlobTools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (267 words) - 21:15, 6 December 2019
Nccl
[[Category:Software]][[Category:Programming]][[Category:Library]][[Category:GPU]]

3 KB (293 words) - 20:03, 21 August 2022
Phenix
[[Category:Software]][[Category:Material Science]] PHENIX is a software suite for the automated determination of macromolecular structures using X-

3 KB (325 words) - 18:12, 21 August 2022
Applications
[[Category:Software]]

1 KB (138 words) - 13:26, 27 September 2022
RepeatAnalysis
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

2 KB (238 words) - 14:34, 26 August 2020
Gffread
[[Category:Software]][[Category:Biology]]

2 KB (242 words) - 19:02, 12 August 2022
Cyvcf2
[[Category:Software]]

2 KB (260 words) - 14:47, 28 July 2023
Alienhunter
[[Category:Software]][[Category:Sequencing]][[Category:Biology]]

2 KB (256 words) - 12:34, 12 August 2022
VISPR
[[Category:Software]][[Category:Phylogenetics]]

2 KB (261 words) - 15:53, 21 June 2023
YAK
[[Category:Software]][[Category:Phylogenetics]]

2 KB (293 words) - 16:10, 10 March 2021
Svim-asm
[[Category:Software]][[Category:Biology]]

3 KB (306 words) - 17:16, 31 May 2022
OpenFOAM
[[Category:Software]][[Category:Fluid Dynamics]] |{{#vardefine:exe|}} 

3 KB (445 words) - 14:20, 15 December 2022
Nt
[[Category:Software]]

2 KB (262 words) - 14:38, 15 July 2022
Leafaudio
[[Category:Software]][[Category:Audio]][[Category:Machine Learning]]

2 KB (288 words) - 19:49, 15 August 2022
FALCON fc run cfg
[[Category:Software]]

2 KB (248 words) - 20:31, 2 August 2021
SUNDIALS
[[Category:Software]][[Category:Math]] ...Differential/Algebraic Equation Solvers," ACM Transactions on Mathematical Software, 31(3), pp. 363-396, 2005. Also available as LLNL technical report UCRL-JP-

3 KB (364 words) - 15:25, 19 August 2022
Snp2hla
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|https://software.broadinstitute.org/mpg/snp2hla/}}

3 KB (379 words) - 20:42, 12 August 2022
QuartetScores
[[Category:Software]][[Category:Phylogenetics]]

2 KB (258 words) - 14:50, 27 April 2020
CycleGan
[[Category:Software]][[Category:Phylogenetics]]

2 KB (249 words) - 15:06, 14 April 2021
Dancemapper
[[Category:Software]][[Category:Machine Learning]]

2 KB (252 words) - 22:13, 6 March 2023
Omniverse
[[Category:Software]][[Category:Library]][[Category:Math]]

7 KB (983 words) - 14:48, 25 July 2023
OPENACC
[[Category:Software]][[Category:Programming]]

2 KB (291 words) - 12:01, 26 August 2022
RDnaTools
[[Category:Software]][[Category:Phylogenetics]] ...Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol,

3 KB (361 words) - 21:24, 6 December 2019
Deepvariant
[[Category:Software]]

3 KB (356 words) - 13:17, 16 April 2024
IOAPI
[[Category:Software]][[Category:Climate]] |{{#vardefine:exe|}} 

2 KB (341 words) - 19:35, 24 August 2022
CPAT
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (277 words) - 16:34, 10 June 2022
Kma
[[Category:Software]][[Category:Library]][[Category:Data Science]]

2 KB (292 words) - 15:51, 30 January 2023
Bigslice
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (295 words) - 21:25, 14 September 2023
FastQTL
[[Category:Software]][[Category:Phylogenetics]]

3 KB (325 words) - 14:40, 22 July 2020
PhyloAcc
[[Category:Software]][[Category:Phylogenetics]] This is a software to detect the shift pattern of DNA substitution rate of a genomic region an

4 KB (469 words) - 20:53, 18 May 2021
RepeatExplorer
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (278 words) - 21:44, 21 August 2022
RagTag
[[Category:Software]][[Category:Phylogenetics]]

2 KB (263 words) - 15:27, 13 August 2020
Pvconv
[[Category:Software]]

2 KB (265 words) - 21:12, 24 October 2022
AdmixTools
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] ADMIXTOOLS (Patterson et al. 2012) is a software package that supports formal tests of whether admixture occurred, and makes

3 KB (400 words) - 20:50, 11 August 2022
INLA
[[Category:Software]][[Category:statistics]][[Category:modeling]][[Category:Programming]]

2 KB (236 words) - 12:20, 26 August 2022
WoLFPSort
[[Category:Software]][[Category:Phylogenetics]]

3 KB (309 words) - 21:29, 6 December 2019
Gmap
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] |{{#vardefine:exe|1}} 

3 KB (450 words) - 17:11, 15 August 2022
ROOT
[[Category:Software]][[Category:Data Science]]

3 KB (358 words) - 16:48, 21 August 2022
WGS Assembler
[[Category:Software]][[Category:biology]][[Category:genomics]] Celera Assembler : scientific software for biological research. Celera Assembler is a de novo whole-genome shotgun

3 KB (359 words) - 20:56, 12 August 2022
Vfuparr
[[Category:Software]][[Category:Sequencing]][[Category:Biology]] ...LURM systems, this workflow allows users to easily incorporate any docking software of their choice, ensuring maximum flexibility.

3 KB (392 words) - 20:35, 9 April 2024
Phylopypruner
[[Category:Software]][[Category:Phylogenetics]]

2 KB (263 words) - 18:41, 27 May 2022
DeFusion
[[Category:Software]][[Category:Phylogenetics]]

2 KB (246 words) - 22:22, 26 August 2020
Vermouth-martinize
[[Category:Software]][[Category:Phylogenetics]]

3 KB (323 words) - 14:21, 1 November 2021
ReFrame
[[Category:Software]][[Category:Performance Analysis]][[Category:Utility]]

2 KB (240 words) - 21:40, 21 August 2022
METIS
[[Category:Software]][[Category:Utility]]

2 KB (247 words) - 19:40, 18 August 2022
Moses
[[Category:Software]]

3 KB (381 words) - 15:15, 17 October 2022
Python-core
[[Category:Software]][[Category:Language]][[Category:Programming]]

3 KB (318 words) - 20:04, 21 August 2022
PEAR
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]] |{{#vardefine:url|http://www.exelixis-lab.org/web/software/pear}}

3 KB (312 words) - 17:25, 21 August 2022
Category:Workflow Automation
[[Category:Software]]

13 members (0 subcategories, 0 files) - 19:51, 22 August 2022
Zagros
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://smithlabresearch.org/software/zagros/}}

2 KB (289 words) - 17:54, 22 August 2022
GSEA
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...://www.pnas.org/content/102/43/15545.abstract To cite your use of the GSEA software, a joint project of UC San Diego and Broad Institute, please reference Subr

2 KB (298 words) - 17:27, 15 August 2022
Nanocomp
[[Category:Software]][[Category:programming]][[Category:sequencing]]

2 KB (282 words) - 12:22, 26 August 2022
Matlab GUI Example
[[Category:Software]]

3 KB (375 words) - 21:32, 24 October 2022
Mugsy
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (298 words) - 21:22, 6 December 2019
SMR
[[Category:Software]] |{{#vardefine:url|https://cnsgenomics.com/software/smr/#Overview}}

3 KB (362 words) - 18:27, 19 August 2021
Sputnik
[[Category:Software]][[Category:Biology]]

2 KB (311 words) - 15:50, 22 August 2022
Camino
[[Category:Software]][[Category:Imaging]][[Category:Biology]][[Category:Neuroscience]] Camino is an open-source software toolkit for diffusion MRI processing. The toolkit implements standard techn

3 KB (291 words) - 18:22, 12 August 2022
TGICL
[[Category:Software]][[Category:biology]][[Category:NGS]][[Category:sequencing]] |{{#vardefine:url|http://compbio.dfci.harvard.edu/tgi/software/}}

3 KB (340 words) - 20:47, 12 August 2022
TriMetAss
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://microbiology.se/software/trimetass/}}

3 KB (344 words) - 20:52, 12 August 2022
Mantis
[[Category:Software]][[Category:Phylogenetics]]

3 KB (368 words) - 17:20, 27 May 2022
Haphpipe
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

3 KB (405 words) - 16:40, 14 March 2023
Rascaf
[[Category:Software]][[Category:Biology]]

3 KB (415 words) - 21:30, 21 August 2022
Mosdepth
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (265 words) - 21:23, 6 December 2019
NetCDF-F
[[Category:Software]][[Category:Data Science]] |{{#vardefine:url|https://www.unidata.ucar.edu/software/netcdf/}}

2 KB (269 words) - 16:36, 2 September 2022
Nbody
[[Category:Software]][[Category:Astronomy]] |{{#vardefine:exe|1}} 

2 KB (248 words) - 13:11, 6 June 2022
Category:Physics
[[Category:Software]]

21 members (0 subcategories, 0 files) - 15:38, 19 September 2014
SAMStat
[[Category:Software]][[Category:biology]][[Category:NGS]][[Category:sequencing]]

3 KB (429 words) - 20:34, 12 August 2022
Predector
[[Category:Software]][[Category:Phylogenetics]]

2 KB (246 words) - 20:21, 31 May 2022
AnnoTALE
[[Category:Software]][[Category:Phylogenetics]]

3 KB (326 words) - 14:15, 17 September 2020
Sc-im
[[Category:Software]][[Category:Visualization]][[Category:Utility]]

2 KB (272 words) - 22:07, 21 August 2022
LINKS
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (274 words) - 16:16, 10 June 2022
Wtdbg
[[Category:Software]][[Category:Phylogenetics]]

3 KB (310 words) - 17:44, 22 August 2022
AlphaMate
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|https://alphagenes.roslin.ed.ac.uk/wp/software-2/alphamate/}}

3 KB (338 words) - 13:46, 9 May 2023
OneFormer
[[Category:Software]][[Category:Imaging]][[Category:Image Processing]][[Category:AI]]

2 KB (246 words) - 14:25, 7 April 2023
KisSplice
[[Category:Software]][[Category:Biology]] KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It

3 KB (359 words) - 19:33, 15 August 2022
PROVEAN
[[Category:Software]][[Category:Biology]][[Category:Genomics]] PROVEAN (Protein Variation Effect Analyzer) is a software tool which predicts whether an amino acid substitution or indel has an impa

3 KB (350 words) - 20:27, 12 August 2022
BIOMART
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (310 words) - 18:16, 12 August 2022
Tuxedo
[[Category:Software]][[Category:Biology]] See individual software wiki pages for more details.

598 bytes (81 words) - 20:53, 12 August 2022
Apptainer
[[Category:Software]][[Category:Workflow Automation]] or even create a shell in the software environment provided by the container with

4 KB (609 words) - 16:30, 12 February 2024
Dragonflye
[[Category:Software]][[Category:Sequencing]][[Category:Genomics]] https://github.com/rpetit3/dragonflye#software-included-19

2 KB (283 words) - 20:18, 12 April 2022
NUPACK
[[Category:Software]][[Category:Phylogenetics]] NUPACK is a software suite for the analysis and design of nucleic acid structures, devices, and

2 KB (263 words) - 21:22, 6 December 2019
Nextstrain
[[Category:Software]][[Category:Phylogenetics]]

3 KB (295 words) - 14:56, 2 March 2020
DecontaMiner
[[Category:Software]]

3 KB (321 words) - 14:56, 2 March 2021
Circos
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] |{{#vardefine:url|http://circos.ca/software/download/circos/}}

3 KB (409 words) - 13:35, 15 August 2022
Rosetta
[[Category:Software]][[Category:Biology]][[Category:Modeling]][[Category:Structure]] Rosetta is the premier software suite for modeling macromolecular

3 KB (302 words) - 20:37, 10 June 2022
Pipe-clip
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (254 words) - 21:22, 6 December 2019
Biology
...ends on the stability of the four main corner stones - hardware resources, software availability and support, training and documentation, and direct consulting ==Software==

4 KB (665 words) - 21:23, 14 December 2022
C-wap
[[Category:Software]][[Category:Sequencing]][[Category:Genomics]][[Category:Biology]]

2 KB (281 words) - 13:16, 15 August 2022
CAMP
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (255 words) - 18:00, 23 May 2022
GHOST-MP
[[Category:Software]][[Category:Phylogenetics]]

2 KB (285 words) - 20:11, 7 May 2020
ResFinder
[[Category:Software]]

3 KB (342 words) - 18:41, 23 April 2021
Hylite
[[Category:Software]]

3 KB (325 words) - 21:51, 24 February 2023
Gflags
[[Category:Software]][[Category:Web]][[Category:Library]]

2 KB (291 words) - 17:07, 15 August 2022
HMM-FRAME
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 21:21, 6 December 2019
Novoalign
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

3 KB (370 words) - 17:19, 19 August 2022
Spacemake
[[Category:Software]][[Category:Sequencing]]

2 KB (249 words) - 22:12, 22 September 2022
DSK
[[Category:Software]][[Category:Biology]][[Category:NGS]] DSK is a k-mer counting software, similar to Jellyfish. DSK can be executed on any machine (only 1 GB memory

3 KB (315 words) - 17:17, 10 June 2022
Dynasor
[[Category:Software]][[Category:Molecular_Dynamics]]

3 KB (416 words) - 16:47, 27 November 2023
ATAT
[[Category:Software]][[Category:Material Science]]

2 KB (247 words) - 15:18, 12 August 2022
MAnorm
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (370 words) - 14:07, 27 May 2022
Rnaeditingindexer
[[Category:Software]][[Category:Biology]]

2 KB (239 words) - 22:53, 21 January 2024
Datamash
[[Category:Software]][[Category:Math]] |{{#vardefine:url|http://www.gnu.org/software/datamash/}}

2 KB (247 words) - 15:01, 10 June 2022
Braker
[[Category:Software]][[Category:Phylogenetics]] https://github.com/Gaius-Augustus/BRAKER#citing-braker-and-software-called-by-braker

2 KB (261 words) - 22:28, 26 August 2020
RepeatAnalysisTools
[[Category:Software]] @software{tange_2021_5013933,

4 KB (430 words) - 16:55, 15 December 2022
Fastq-tools
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (306 words) - 17:31, 10 June 2022
Ltr finder
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (416 words) - 20:21, 15 August 2022
Autometa
[[Category:Software]][[Category:Phylogenetics]]

3 KB (300 words) - 21:19, 6 December 2019
Simulia
[[Category:Software]][[Category:Simulation]][[Category:Visualization]]

2 KB (252 words) - 18:23, 1 June 2022
FFmpeg
[[Category:Software]][[Category:Audio]][[Category:Visualization]]

2 KB (252 words) - 16:41, 15 August 2022
V-Phaser
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

3 KB (390 words) - 20:07, 27 May 2022
Illumiprocessor
[[Category:Software]][[Category:Phylogenetics]]

4 KB (452 words) - 18:44, 15 August 2022
Embree
[[Category:Software]][[Category:Graphics]]

3 KB (343 words) - 15:01, 15 August 2022
Conefor
[[Category:Software]][[Category:Biology]] Conefor is a software package that allows quantifying the importance of habitat areas and links f

3 KB (303 words) - 14:33, 2 May 2023
Spidey
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (295 words) - 20:44, 12 August 2022
Arcashla
[[Category:Software]]

2 KB (250 words) - 19:33, 24 July 2023
Vibrant
[[Category:Software]][[Category:Genomics]]

3 KB (333 words) - 17:36, 15 August 2022
PartitionFinder
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:Genomics]]

3 KB (402 words) - 16:57, 21 August 2022
Create SSH Keys Using Putty
==Prerequisite software== Here is a list of the software you will need to be installed on your local machine to start using key-base

7 KB (1,195 words) - 13:39, 26 June 2023
Svtyper
[[Category:Software]]

3 KB (360 words) - 14:04, 3 October 2022
Bubbleparse
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (246 words) - 14:43, 10 June 2022
XWAS
[[Category:Software]][[Category:Phylogenetics]]

3 KB (383 words) - 13:27, 31 August 2020
VirSieve
[[Category:Software]] [[Category:Software]]

5 KB (639 words) - 18:59, 14 December 2022
Micop
[[Category:Software]][[Category:Genomics]]

2 KB (269 words) - 16:40, 27 September 2022

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