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• DISCOVAR de novo
  [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Assembly]] DISCOVAR is a new variant caller and DISCOVAR de novo a new genome assembler, both designed for state-of-the-art data. Their inpu
  3 KB (326 words) - 14:41, 15 August 2022
• GapFiller
  De novo assembly is a commonly used application of next-generation sequencing experiments. T
  3 KB (331 words) - 16:52, 15 August 2022
• PlantTribes
  ...mes to perform comparative evolutionary studies. It post-processes de novo assembly transcripts into putative coding sequences and their corresponding amino ac
  3 KB (331 words) - 13:29, 4 October 2021
• Wengan
  identifies miss-assemblies at different steps of the assembly process. For more information ...., Buena-Atienza, E., Ossowski, S. and Sagot,M-F. Efficient hybrid de novo assembly of human genomes with WENGAN. Nature Biotechnology (2020),
  4 KB (472 words) - 20:55, 12 August 2022
• PolyGembler
  ...linakge maps or chromosomal-scale pseudomolecules combining de novo genome assembly and genetic mapping. The method assumes availability of genome-wide genotyp
  3 KB (344 words) - 13:45, 3 November 2020
• ALLMAPS
  ...olds to reconstruct chromosomes is an essential step during de novo genome assembly. This process is often assisted by various mapping techniques. Because each
  3 KB (361 words) - 21:11, 6 December 2019
• Musket
  ...ance evaluation results, in terms of correction quality and de novo genome assembly measures, reveal that Musket is consistently one of the top performing subs
  3 KB (351 words) - 13:44, 19 August 2022
• TransDecoder
  sequences, such as those generated by de novo RNA-Seq transcript assembly
  3 KB (371 words) - 16:54, 22 August 2022
• Wgs
  ...r is scientific software for biological research. Celera Assembler is a de novo whole-genome shotgun (WGS) DNA sequence assembler. It reconstructs long seq ...ttp://www.sciencemag.org/cgi/content/abstract/287/5461/2196 A Whole-Genome Assembly of Drosophila]. Science 287 2196-2204.
  3 KB (375 words) - 20:55, 12 August 2022
• ART
  ...ext-generation sequencing data analysis, including read alignment, de novo assembly, SNP and structure variation discovery. ART was used as a primary tool for
  3 KB (440 words) - 21:10, 6 December 2019
• QDD
  ...enomes - sequences can be assembled into contigs. QDD3 does NOT do de novo assembly, but can take contigs (scaffolds/chormosomes) as an input, and extracts mic
  4 KB (485 words) - 20:08, 21 August 2022

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